Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 2062.3 1025 100.0
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1686.0 1055 78.3
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1676.0 1051 78.2
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1663.7 1055 77.1
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1648.6 1055 76.7
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1638.2 1054 76.5
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1636.7 1054 75.7
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1624.4 1055 76.4
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1624.4 1055 74.9
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1624.0 1055 74.8
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1618.6 1055 76.1
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1616.7 1054 75.5
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1615.1 1055 75.7
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1611.3 1054 75.4
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1611.3 1057 76.0
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1606.7 1057 75.2
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1587.4 1053 73.9
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1587.0 1120 70.7
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1584.7 1054 74.2
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1582.8 1057 73.9
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1580.5 1051 74.0
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1575.8 1053 74.0
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1574.7 1055 73.4
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1562.7 1052 73.8
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1556.2 1056 71.7
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1550.8 1071 72.6
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1550.4 1053 72.6
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1549.3 1071 72.5
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1548.1 1052 72.1
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1536.9 1140 68.6
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1533.9 1037 73.2
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1533.5 1053 71.6
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1532.3 1060 71.3
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1530.4 1145 67.7
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1529.2 1060 71.2
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1529.2 1053 71.7
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1528.1 1053 71.3
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1527.7 1060 71.1
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1523.1 1058 70.2
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1521.5 1040 72.9
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1513.8 1045 71.8
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1510.7 1054 70.5
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1502.3 1061 70.9
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1501.9 1055 68.4
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1501.5 1053 70.6
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1500.0 1058 70.3
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1496.5 1056 68.3
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1496.1 1058 68.5
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1493.0 1052 69.6
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1492.2 1052 68.9
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1489.6 1053 70.4
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1489.2 1052 70.8
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1488.4 1055 68.4
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1486.1 1053 70.1
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1479.2 1056 67.7
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1479.2 960 76.2
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1478.8 1056 67.7
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1475.3 1051 69.6
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1474.1 1054 69.4
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1474.1 1051 69.6
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1473.8 1055 68.6
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1473.4 1056 67.5
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1473.0 1051 70.3
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1471.8 1052 69.2
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1470.3 1054 70.1
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1469.1 1048 69.1
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1468.0 975 73.6
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1466.1 1053 69.3
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1465.7 1054 68.7
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1459.1 1131 65.6
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1458.4 1057 67.1
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1456.4 1052 67.9
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1452.6 1052 69.4
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1449.1 1052 67.9
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1446.4 1056 67.0
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1445.3 1056 67.4
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1438.7 1062 68.8
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1435.6 1094 64.8
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1422.1 1053 67.7
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1418.7 1059 65.7
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1417.1 942 74.7
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1416.4 1060 66.5
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1415.6 1049 67.7
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1412.1 1263 57.2
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1402.1 1063 65.9
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1388.2 1058 64.6
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1296.6 1045 61.6
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1280.8 842 74.5
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1275.8 854 73.3
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1236.1 848 71.6
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1214.5 800 74.8
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1119.4 788 68.9
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1088.9 1073 53.3
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1077.8 790 68.6
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 7.9e-306 1053.9 957 58.2
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.8e-302 1042.7 1038 52.2
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 1.1e-288 996.9 1062 50.6
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 1.0e-273 947.2 776 62.0
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.4e-262 910.2 628 70.9
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 6.2e-258 894.8 951 54.2
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 3.1e-249 865.9 632 65.8
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 1.1e-238 830.9 517 73.1
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 8.1e-234 814.7 518 74.3
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 7.4e-211 738.4 448 73.7
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 2.1e-210 736.9 448 73.4
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 8.1e-210 734.9 451 73.6
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.8e-209 733.8 481 69.4
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 2.6e-208 729.9 468 72.6
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.3e-207 727.6 695 55.4
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 2.7e-205 719.9 496 66.9
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.5e-200 704.1 448 70.3
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 1.7e-199 700.7 444 70.7
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 1.1e-198 698.0 450 72.4
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.5e-195 687.6 461 69.0
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 2.2e-194 683.7 447 70.9
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 3.1e-185 653.3 471 64.3
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 8.2e-170 602.1 428 69.9
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 7.0e-169 599.0 451 64.7
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 7.7e-168 595.5 457 61.5
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 1.6e-165 587.8 400 73.2
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 1.4e-164 584.7 448 61.2
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 1.2e-157 561.6 366 71.3
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.8e-156 557.8 405 69.1
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 9.2e-153 545.4 360 70.3
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 8.9e-148 528.9 586 51.2
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 9.2e-145 518.8 1086 32.3
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 1.0e-119 435.6 267 74.5
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 1.3e-114 418.7 240 81.2
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 1.1e-108 399.1 286 67.5
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 7.6e-107 392.9 271 69.0
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 5.6e-102 376.7 216 81.9
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 6.2e-101 373.2 318 60.7
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 2.4e-100 371.3 266 69.9
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 3.1e-100 370.9 238 73.1
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 8.4e-98 362.8 243 72.4
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 1.3e-69 269.2 156 77.6
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 4.8e-69 267.3 210 62.9
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 5.5e-65 253.8 286 48.3
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 2.6e-62 245.0 206 61.7
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 8.3e-45 186.8 122 68.0
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 8.3e-45 186.8 157 63.7
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 7.0e-44 183.7 156 57.7
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 3.8e-42 177.9 179 58.1
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 1.2e-40 172.9 180 55.0
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 2.8e-37 161.8 110 74.5
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 1.7e-34 152.5 137 56.2
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 2.9e-34 151.8 137 57.7
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 6.8e-31 140.6 106 67.9
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 2.6e-30 138.7 97 72.2
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.7e-29 136.0 85 70.6
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 1.4e-28 132.9 83 71.1
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 9.5e-25 120.2 96 60.4
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 2.6e-22 112.1 96 57.3
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 1.3e-21 109.8 54 87.0
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 2.5e-17 95.5 98 53.1
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 5.6e-17 94.4 74 66.2
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 9.5e-17 93.6 83 51.8
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 9.5e-17 93.6 62 75.8
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 1.6e-16 92.8 59 66.1
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 1.6e-16 92.8 77 61.0
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 3.1e-15 88.6 74 63.5
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 1.5e-14 86.3 56 64.3
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 9.9e-14 83.6 53 73.6
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.2e-13 82.4 74 59.5
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 6.4e-13 80.9 76 57.9
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 6.6e-10 70.9 44 72.7
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 5.6e-09 67.8 41 73.2
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 7.3e-09 67.4 48 70.8
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 4.7e-08 64.7 44 63.6
CDE05G2763 Ceratophyllum demersum HOM05D004198 ORTHO05D130465 6.8e-07 60.8 82 37.8
AUR62036524 Chenopodium quinoa HOM05D000030 ORTHO05D000009 9.9e-06 57.0 47 55.3


User provided reference genes

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