Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 4.7e-147 524.6 290 100.0
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 3.3e-116 422.2 337 71.2
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 9.0e-114 414.1 296 74.0
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 9.6e-108 394.0 323 66.3
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.3e-107 393.7 323 66.3
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.3e-107 391.3 323 65.9
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 8.2e-107 391.0 320 65.6
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 1.8e-106 389.8 318 66.4
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 6.9e-106 387.9 321 67.0
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 6.9e-106 387.9 320 65.6
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 9.0e-106 387.5 319 65.8
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 2.3e-101 372.9 318 62.9
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 6.7e-101 371.3 316 63.0
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.9e-100 369.8 311 64.6
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 2.5e-100 369.4 296 66.2
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 3.3e-100 369.0 316 63.6
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 1.3e-99 367.1 315 62.5
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 1.8e-98 363.2 312 63.1
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.8e-98 363.2 316 62.0
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.1e-98 362.5 323 60.4
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 9.0e-98 360.9 317 61.5
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.5e-97 360.1 340 59.7
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 2.6e-97 359.4 317 61.2
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 4.5e-97 358.6 317 60.6
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.0e-96 357.5 318 61.9
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 6.5e-96 354.8 339 59.3
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 1.4e-95 353.6 320 59.4
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 4.2e-95 352.1 296 62.5
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 4.2e-95 352.1 293 62.1
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 4.2e-95 352.1 321 59.5
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 5.5e-95 351.7 312 62.5
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 7.2e-95 351.3 321 59.8
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 3.6e-94 349.0 293 62.5
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 6.7e-93 344.7 294 61.6
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.1e-92 344.0 315 58.7
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 3.3e-92 342.4 296 62.2
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 4.4e-92 342.0 317 59.9
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 5.7e-92 341.7 307 59.3
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 9.7e-92 340.9 320 58.8
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 9.7e-92 340.9 320 59.7
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 1.7e-91 340.1 298 61.7
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.7e-91 340.1 320 59.1
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 2.8e-91 339.3 318 57.9
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 2.8e-91 339.3 298 61.7
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 3.7e-91 339.0 298 61.7
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 4.8e-91 338.6 295 61.4
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 6.3e-91 338.2 320 58.1
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 1.1e-90 337.4 320 58.1
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.4e-90 337.0 319 57.7
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.8e-90 336.7 321 57.9
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 3.1e-90 335.9 298 61.1
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 4.1e-90 335.5 320 58.1
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 5.3e-90 335.1 317 58.4
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 5.3e-90 335.1 311 60.5
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 5.3e-90 335.1 351 57.5
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 9.1e-90 334.3 315 56.8
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.5e-89 333.6 319 58.0
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.5e-89 333.6 319 58.0
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 1.5e-89 333.6 316 60.1
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 3.4e-89 332.4 319 57.1
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 4.5e-89 332.0 319 56.4
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 4.5e-89 332.0 318 57.9
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 5.9e-89 331.6 316 58.2
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 5.9e-89 331.6 313 58.8
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 5.9e-89 331.6 295 59.7
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 7.7e-89 331.3 320 57.5
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 7.7e-89 331.3 317 58.0
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 1.0e-88 330.9 317 58.0
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 2.2e-88 329.7 317 57.7
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 2.2e-88 329.7 320 56.9
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.8e-88 328.9 376 52.1
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.0e-88 328.6 317 57.7
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 6.5e-88 328.2 317 56.5
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-87 327.0 319 57.1
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.4e-87 327.0 319 57.1
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.9e-87 326.6 259 65.6
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.9e-87 326.6 264 63.3
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 1.9e-87 326.6 317 56.2
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 3.2e-87 325.9 295 59.3
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 4.2e-87 325.5 320 56.6
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 4.2e-87 325.5 296 56.4
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.5e-87 325.1 321 56.1
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 5.5e-87 325.1 296 57.4
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 7.2e-87 324.7 320 56.6
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 7.2e-87 324.7 321 56.1
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 7.2e-87 324.7 321 56.1
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 7.2e-87 324.7 321 56.1
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 7.2e-87 324.7 317 55.8
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 9.4e-87 324.3 313 58.5
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.6e-86 323.6 295 59.3
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.1e-86 323.2 293 57.3
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 3.6e-86 322.4 320 56.2
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.6e-86 322.4 321 55.8
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 3.6e-86 322.4 313 55.3
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 1.0e-85 320.9 322 56.8
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 1.4e-85 320.5 322 55.9
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 5.2e-85 318.5 306 54.9
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 5.2e-85 318.5 310 56.8
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 6.7e-85 318.2 321 55.8
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 8.8e-85 317.8 296 57.8
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.6e-84 316.2 288 57.6
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 9.7e-84 314.3 322 55.6
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 9.7e-84 314.3 314 55.1
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 9.7e-84 314.3 295 57.6
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.7e-83 313.5 319 55.5
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 2.8e-83 312.8 314 57.0
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 3.7e-83 312.4 374 50.8
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 4.8e-83 312.0 343 53.4
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 4.8e-83 312.0 305 57.0
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 8.2e-83 311.2 310 56.1
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 1.1e-82 310.8 312 55.4
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 1.1e-82 310.8 321 54.8
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.8e-82 310.1 288 57.3
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 7.0e-82 308.1 337 52.2
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 9.1e-82 307.8 340 52.9
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 2.6e-81 306.2 313 54.3
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 5.9e-81 305.1 337 52.2
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 5.9e-81 305.1 313 54.3
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 2.2e-80 303.1 321 52.0
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 2.2e-80 303.1 304 56.9
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 5.0e-80 302.0 312 54.2
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 6.5e-80 301.6 267 61.0
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.5e-79 299.7 312 53.5
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 3.2e-79 299.3 292 55.1
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 4.2e-79 298.9 336 53.0
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 3.0e-77 292.7 399 44.4
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 2.6e-76 289.7 277 56.3
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 9.7e-76 287.7 310 53.5
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 4.5e-73 278.9 234 64.1
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 1.3e-72 277.3 321 46.4
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 9.8e-68 261.2 334 48.5
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 5.5e-63 245.4 298 45.6
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 4.4e-60 235.7 294 50.0
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 2.2e-59 233.4 293 49.1
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 6.3e-59 231.9 318 43.7
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 6.3e-59 231.9 270 51.9
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 1.7e-56 223.8 319 44.5
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 2.9e-56 223.0 248 48.8
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.8e-53 213.8 144 73.6
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 2.4e-50 203.4 142 69.0
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 5.4e-50 202.2 287 42.5
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 2.0e-49 200.3 292 41.4
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 4.3e-47 192.6 217 51.6
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 9.2e-42 174.9 257 43.6
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 2.9e-35 153.3 182 48.9
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 4.1e-34 149.4 167 49.1
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 6.0e-33 145.6 130 62.3
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 3.0e-32 143.3 130 63.8
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 6.2e-30 135.6 114 62.3
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.2e-28 131.3 305 31.5
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 5.8e-28 129.0 104 67.3
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.8e-27 126.3 137 54.0
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 4.6e-25 119.4 84 67.9
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.0e-24 118.2 294 31.0
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 1.5e-23 114.4 193 40.4
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.6e-23 112.5 129 50.4
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 4.0e-21 106.3 96 56.2
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 5.8e-20 102.4 70 71.4
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 1.9e-18 97.4 92 60.9
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 5.4e-18 95.9 111 52.3
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 4.0e-13 79.7 68 57.4
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 3.8e-11 73.2 43 76.7
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 7.1e-10 68.9 54 64.8
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 7.1e-10 68.9 54 57.4
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 7.1e-10 68.9 68 50.0
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 6.7e-08 62.4 59 59.3
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 6.2e-06 55.8 68 45.6


User provided reference genes

Program Settings