Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 1.1e-181 639.8 324 100.0
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 1.1e-149 533.5 323 82.7
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 2.4e-147 525.8 323 82.0
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 3.8e-145 518.5 323 81.7
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 1.3e-142 510.0 323 80.5
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 6.7e-142 507.7 323 78.6
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 1.6e-140 503.1 311 80.7
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 1.6e-140 503.1 365 71.5
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 2.8e-140 502.3 326 77.6
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 6.3e-140 501.1 323 78.3
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 5.3e-139 498.0 323 78.9
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 2.0e-138 496.1 324 78.4
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 3.4e-138 495.4 323 79.3
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 3.4e-138 495.4 323 79.3
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 1.3e-137 493.4 322 78.6
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 3.8e-137 491.9 323 78.3
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 5.0e-137 491.5 323 78.6
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 8.5e-137 490.7 323 76.8
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.9e-136 489.6 322 77.3
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 3.2e-136 488.8 322 77.6
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 3.2e-136 488.8 328 77.4
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 4.2e-136 488.4 306 80.7
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 9.4e-136 487.3 306 79.4
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 3.6e-135 485.3 321 79.1
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.0e-134 483.8 320 77.5
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.0e-134 483.8 320 77.5
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 1.4e-134 483.4 323 78.3
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.4e-134 483.4 327 76.1
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 3.9e-134 481.9 325 76.0
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 6.7e-134 481.1 320 77.5
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 6.7e-134 481.1 323 77.7
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 3.3e-133 478.8 319 77.1
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 4.3e-133 478.4 314 77.4
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 5.7e-133 478.0 336 74.7
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 5.7e-133 478.0 325 75.7
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 2.2e-132 476.1 320 77.5
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.4e-131 472.6 319 76.2
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 1.2e-130 470.3 320 76.2
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 2.0e-130 469.5 318 77.0
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 4.5e-130 468.4 340 73.2
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 5.9e-130 468.0 322 73.6
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 1.2e-127 460.3 326 72.7
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 3.0e-126 455.7 323 74.3
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 5.1e-126 454.9 322 70.5
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 1.5e-125 453.4 322 70.5
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 2.0e-125 453.0 309 71.8
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 4.4e-125 451.8 324 73.1
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 1.7e-124 449.9 314 73.9
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 8.2e-124 447.6 305 72.5
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 1.1e-123 447.2 325 72.6
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 4.1e-123 445.3 319 73.7
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 4.1e-123 445.3 298 74.8
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 3.5e-122 442.2 312 71.8
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 5.9e-122 441.4 315 73.0
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 5.9e-122 441.4 323 69.7
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 1.7e-121 439.9 308 72.7
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 2.9e-121 439.1 322 68.3
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 3.8e-121 438.7 325 72.6
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 5.5e-120 434.9 323 69.7
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 2.7e-119 432.6 323 69.0
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 8.0e-119 431.0 320 71.9
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 1.4e-118 430.3 329 67.5
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 6.7e-118 427.9 315 68.9
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 8.8e-118 427.6 292 74.3
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 1.5e-117 426.8 323 70.0
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 1.3e-116 423.7 293 74.4
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 3.7e-116 422.2 293 72.7
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 8.2e-116 421.0 297 70.4
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 8.2e-116 421.0 305 73.4
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 1.1e-115 420.6 323 68.1
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 4.1e-115 418.7 323 68.4
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 7.0e-115 417.9 293 72.4
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 1.2e-114 417.2 292 71.6
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 2.0e-114 416.4 298 71.1
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 4.5e-114 415.2 291 72.9
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 1.0e-113 414.1 299 70.6
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 1.0e-113 414.1 322 67.1
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.3e-113 413.7 281 75.1
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 2.9e-113 412.5 299 70.9
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 8.5e-113 411.0 296 70.6
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 1.5e-112 410.2 323 66.6
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 4.2e-112 408.7 286 72.4
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 1.2e-111 407.1 289 70.6
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 8.8e-110 401.0 327 64.2
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 1.2e-109 400.6 301 68.8
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 2.0e-109 399.8 322 65.8
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 2.0e-109 399.8 322 66.1
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 5.7e-109 398.3 298 68.1
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 5.7e-109 398.3 297 69.4
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 1.7e-108 396.7 308 67.9
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 1.7e-108 396.7 315 66.7
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 1.8e-107 393.3 323 63.8
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 4.2e-104 382.1 325 64.0
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 4.7e-103 378.6 330 60.3
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 5.2e-102 375.2 277 71.5
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 3.4e-101 372.5 347 59.7
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 1.1e-99 367.5 273 64.5
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 5.9e-98 361.7 312 61.2
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 2.1e-95 353.2 338 55.9
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 2.8e-95 352.8 379 53.0
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 3.6e-95 352.4 246 72.8
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 1.8e-94 350.1 342 56.4
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 2.7e-90 336.3 220 77.7
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.0e-85 320.1 219 75.8
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 5.2e-78 295.4 195 77.9
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.6e-77 293.1 223 67.7
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 3.0e-73 279.6 305 49.5
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 2.7e-66 256.5 154 82.5
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 7.8e-66 255.0 225 61.8
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 4.7e-63 245.7 321 44.5
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 8.9e-62 241.5 312 46.2
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 1.1e-56 224.6 347 40.3
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 1.3e-55 221.1 205 62.4
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 7.6e-45 185.3 119 75.6
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 2.2e-36 157.1 91 80.2
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 8.4e-36 155.2 173 56.1
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 8.4e-36 155.2 90 80.0
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 2.6e-29 133.7 85 74.1
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 2.6e-29 133.7 85 74.1
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 1.4e-27 127.9 340 28.8
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 9.3e-27 125.2 300 33.7
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 3.9e-25 119.8 335 28.1
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 2.6e-21 107.1 66 81.8
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 3.8e-20 103.2 82 72.0
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 8.5e-20 102.1 82 70.7
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 8.5e-20 102.1 82 70.7
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 7.2e-19 99.0 82 63.4
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 7.2e-19 99.0 79 72.2
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 3.0e-17 93.6 52 86.5
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 2.4e-14 84.0 96 47.9
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 5.9e-13 79.3 43 81.4
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 6.1e-10 69.3 45 73.3
TPR.G25462 Trifolium pratense HOM05D000254 ORTHO05D000165 2.3e-09 67.4 116 35.3
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 3.0e-09 67.0 66 57.6
TPR.G25476 Trifolium pratense HOM05D000254 ORTHO05D000165 1.4e-06 58.2 111 36.9


User provided reference genes

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