Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 4.8e-245 850.9 485 100.0
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 8.5e-242 840.1 485 99.0
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 2.5e-169 599.4 489 69.7
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 5.5e-164 581.6 488 68.4
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 2.1e-163 579.7 492 70.1
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 1.3e-162 577.0 488 66.4
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 1.8e-162 576.6 477 70.0
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 2.3e-162 576.2 483 70.4
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 4.8e-160 568.5 496 66.9
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 1.7e-157 560.1 490 65.7
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 3.8e-157 558.9 481 71.9
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.1e-156 557.4 488 66.0
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.4e-156 557.0 488 65.6
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.9e-156 556.6 476 68.7
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 5.5e-156 555.1 476 68.5
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 7.1e-156 554.7 488 63.9
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.6e-155 553.5 479 71.2
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 8.7e-154 547.7 479 72.2
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 2.5e-153 546.2 505 62.2
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 4.3e-153 545.4 479 67.6
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 6.3e-152 541.6 481 68.6
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 1.5e-150 537.0 397 69.8
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 3.4e-150 535.8 481 69.0
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 4.5e-150 535.4 462 62.1
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.0e-149 534.3 463 62.4
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 1.7e-149 533.5 480 66.9
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 6.5e-149 531.6 479 64.1
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 6.5e-149 531.6 496 63.9
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 7.2e-148 528.1 487 60.4
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.6e-147 525.8 484 63.0
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 1.0e-146 524.2 487 66.1
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 1.3e-146 523.9 474 67.1
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.8e-146 523.5 481 61.5
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 2.3e-146 523.1 491 61.3
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.0e-146 522.7 477 60.0
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 1.1e-145 520.8 485 59.0
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.8e-144 516.2 481 66.3
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 2.8e-144 516.2 483 64.0
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.7e-144 515.8 482 61.0
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 6.3e-144 515.0 395 75.4
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.1e-143 514.2 478 67.4
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 1.4e-143 513.8 475 67.8
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.4e-143 513.8 475 67.8
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.4e-143 513.8 481 66.9
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.4e-143 513.1 484 59.9
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 3.1e-143 512.7 477 68.6
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 4.1e-143 512.3 477 67.3
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 6.9e-143 511.5 470 66.0
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 6.9e-143 511.5 482 59.5
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 1.2e-142 510.8 472 61.9
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 1.2e-142 510.8 496 59.5
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.5e-142 510.4 478 59.0
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 4.5e-142 508.8 499 63.5
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 4.5e-142 508.8 511 56.9
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 5.9e-142 508.4 476 59.5
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.3e-141 507.3 483 60.2
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.3e-141 507.3 491 66.6
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 5.0e-141 505.4 487 60.8
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 6.5e-141 505.0 487 63.7
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 6.5e-141 505.0 487 66.1
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.5e-140 503.1 482 64.1
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 3.2e-140 502.7 482 60.8
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 4.2e-140 502.3 413 66.3
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 1.6e-139 500.4 516 57.8
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 2.7e-139 499.6 488 60.5
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.7e-139 499.6 487 59.5
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.7e-139 499.6 505 58.4
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 7.9e-139 498.0 484 64.3
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 7.9e-139 498.0 480 58.3
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.0e-138 497.7 487 58.7
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.0e-138 497.7 485 62.5
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.4e-138 497.3 484 61.2
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.8e-138 496.9 386 73.1
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 3.9e-138 495.7 486 59.5
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 3.9e-138 495.7 479 61.8
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 3.9e-138 495.7 495 59.2
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 6.7e-138 495.0 483 57.3
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 6.7e-138 495.0 479 59.5
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 6.7e-138 495.0 481 59.0
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.1e-137 494.2 486 58.6
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 1.5e-137 493.8 481 62.6
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 2.0e-137 493.4 461 66.2
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 3.3e-137 492.7 492 58.5
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 3.3e-137 492.7 489 59.9
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 5.7e-137 491.9 482 65.8
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 7.4e-137 491.5 478 63.4
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.4e-137 491.5 480 61.5
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 9.7e-137 491.1 479 61.4
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 1.7e-136 490.3 474 57.8
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 2.2e-136 490.0 480 65.2
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 4.8e-136 488.8 469 64.6
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 4.8e-136 488.8 455 67.3
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 8.2e-136 488.0 485 61.9
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.1e-135 487.6 477 60.8
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.4e-135 487.3 477 58.1
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.4e-135 487.3 480 61.0
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.8e-135 486.9 482 63.3
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 1.8e-135 486.9 478 56.9
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 5.3e-135 485.3 477 59.3
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 6.9e-135 485.0 488 63.9
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 9.1e-135 484.6 476 63.0
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 9.1e-135 484.6 474 65.0
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 2.0e-134 483.4 490 56.7
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 2.0e-134 483.4 481 63.2
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 2.6e-134 483.0 481 63.6
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 2.6e-134 483.0 476 60.7
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 4.5e-134 482.3 483 59.4
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.3e-133 480.7 490 59.6
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.7e-133 480.3 477 57.2
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 2.9e-133 479.6 481 61.3
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 5.0e-133 478.8 459 61.2
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 6.5e-133 478.4 481 61.5
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.4e-132 477.2 482 63.3
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 1.4e-132 477.2 487 57.5
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 5.5e-132 475.3 490 55.9
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 9.4e-132 474.6 483 59.0
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.2e-131 474.2 484 59.1
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 2.7e-131 473.0 491 56.4
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 3.6e-131 472.6 484 58.1
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 3.6e-131 472.6 481 55.7
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 4.7e-131 472.2 491 59.7
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 1.0e-130 471.1 481 58.8
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 2.3e-130 469.9 475 60.8
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.0e-130 469.5 408 63.0
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 3.0e-130 469.5 489 56.2
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 3.9e-130 469.2 480 59.4
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 2.0e-129 466.8 474 61.8
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.4e-129 465.7 462 63.4
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 3.7e-128 462.6 399 63.4
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 1.8e-127 460.3 474 62.9
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.2e-126 457.6 495 53.1
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 1.2e-126 457.6 490 55.3
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 7.7e-126 454.9 481 53.0
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.0e-122 444.5 477 52.4
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 2.6e-121 439.9 452 60.4
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.6e-121 439.9 314 70.7
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 7.5e-121 438.3 405 64.7
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.3e-120 437.6 405 58.5
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 1.3e-120 437.6 483 53.6
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 1.2e-115 421.0 479 51.8
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 2.1e-115 420.2 459 52.7
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 1.4e-114 417.5 476 53.8
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 1.8e-114 417.2 386 64.2
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 2.3e-109 400.2 416 57.2
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.2e-105 387.9 269 70.6
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 3.1e-103 379.8 493 47.1
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 1.3e-96 357.8 383 50.7
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 6.8e-90 335.5 470 53.0
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 3.9e-85 319.7 479 40.1
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.1e-82 311.6 476 43.7
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.1e-82 311.6 338 52.7
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 5.6e-60 236.1 195 80.0
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 1.3e-59 235.0 356 40.2
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 2.9e-56 223.8 192 62.0
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 1.2e-49 201.8 189 55.6
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 2.5e-47 194.1 335 43.9
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 4.2e-47 193.4 363 34.2
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 2.7e-38 164.1 118 66.9
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 8.7e-37 159.1 137 70.8
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.5e-33 148.3 144 53.5
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.4e-33 147.1 129 69.8
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 2.2e-32 144.4 278 33.5
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 3.6e-30 137.1 100 67.0
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 3.0e-29 134.0 129 64.3
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 1.7e-27 128.3 318 32.7
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.2e-27 127.9 100 67.0
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 1.0e-24 119.0 145 48.3
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.4e-23 115.2 318 35.5
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 9.4e-23 112.5 284 27.8
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 6.7e-21 106.3 183 39.9
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 6.7e-21 106.3 183 39.9
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 5.5e-15 86.7 71 53.5
Cfa000173 Carpinus fangiana HOM05D000321 ORTHO05D000204 1.2e-09 68.9 147 44.9
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.0e-08 65.9 48 62.5


User provided reference genes

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