Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 2.5e-148 529.3 372 100.0
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 9.4e-124 447.6 374 88.0
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.1e-119 434.1 374 86.9
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 2.1e-115 419.9 372 84.7
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 2.0e-113 413.3 374 85.0
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.7e-112 410.2 374 84.0
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 2.8e-112 409.5 374 68.7
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 6.3e-112 408.3 374 84.2
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 6.3e-112 408.3 374 83.7
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 8.3e-112 407.9 374 79.7
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 7.0e-111 404.8 373 83.1
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 7.0e-111 404.8 373 80.4
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 1.6e-110 403.7 375 68.0
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 1.5e-108 397.1 375 77.9
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 4.3e-108 395.6 374 80.2
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 9.5e-108 394.4 377 83.0
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 2.1e-107 393.3 375 70.1
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 1.4e-106 390.6 372 80.6
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 4.0e-106 389.0 377 80.6
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 1.2e-105 387.5 375 79.5
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 4.4e-105 385.6 373 78.0
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 5.7e-105 385.2 373 78.0
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 2.2e-104 383.3 374 82.1
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 1.1e-103 380.9 375 80.0
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 5.4e-103 378.6 401 64.3
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 7.0e-103 378.3 377 75.6
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 9.2e-103 377.9 380 78.9
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.7e-102 376.3 396 73.5
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 4.6e-102 375.6 373 79.1
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.0e-101 374.4 374 80.2
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 1.7e-101 373.6 375 76.5
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.1e-100 370.9 376 76.9
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 1.5e-100 370.5 376 78.5
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 9.5e-100 367.9 382 80.9
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 2.1e-99 366.7 378 75.1
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 2.1e-99 366.7 378 75.1
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.6e-99 365.9 373 66.5
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 4.7e-99 365.5 375 76.3
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 6.2e-99 365.2 374 76.5
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 8.0e-99 364.8 376 76.3
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.0e-98 364.4 362 77.9
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 1.4e-98 364.0 376 75.8
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 1.5e-97 360.5 383 76.0
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 4.4e-97 359.0 372 76.9
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 1.7e-96 357.1 374 77.5
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 3.7e-96 355.9 374 75.9
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 9.2e-95 351.3 372 72.0
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 1.6e-94 350.5 367 72.8
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 6.0e-94 348.6 374 76.5
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 1.7e-93 347.1 357 76.8
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.0e-93 346.3 331 75.2
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 3.0e-93 346.3 374 66.3
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 6.6e-93 345.1 373 73.5
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 8.6e-93 344.7 373 75.9
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 1.5e-92 344.0 374 75.9
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 1.2e-91 340.9 373 73.2
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 8.1e-91 338.2 371 73.3
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 6.8e-90 335.1 374 75.4
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.2e-89 334.3 341 75.7
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 2.6e-89 333.2 343 73.5
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 9.8e-89 331.3 385 71.2
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 1.3e-88 330.9 366 72.1
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 2.9e-88 329.7 369 70.2
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 4.9e-88 328.9 377 76.1
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 8.3e-88 328.2 376 71.8
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 1.9e-87 327.0 381 75.1
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 6.0e-86 322.0 375 72.0
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 6.6e-85 318.5 347 80.4
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 8.6e-85 318.2 347 80.7
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 2.3e-82 310.1 495 41.6
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 4.4e-81 305.8 357 71.1
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 9.2e-79 298.1 361 71.5
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.7e-77 293.9 355 71.5
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 3.9e-77 292.7 388 69.6
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 5.1e-77 292.4 378 70.9
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 1.1e-76 291.2 372 66.7
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.5e-76 290.8 372 66.7
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.5e-76 290.8 372 66.7
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.5e-76 290.8 372 66.7
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 1.5e-76 290.8 381 68.8
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 4.3e-76 289.3 379 69.9
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 9.6e-76 288.1 379 69.1
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 3.6e-75 286.2 366 66.9
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 9.0e-74 281.6 388 65.7
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.2e-73 281.2 384 67.4
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 1.4e-71 274.2 366 66.4
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 9.3e-71 271.6 371 65.2
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 2.1e-70 270.4 385 67.5
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 7.8e-70 268.5 384 69.0
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 1.7e-69 267.3 333 72.1
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 1.1e-68 264.6 373 65.7
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 1.9e-68 263.8 346 67.9
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 5.6e-68 262.3 371 64.2
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 7.3e-68 261.9 372 62.9
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 2.1e-67 260.4 381 45.9
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.1e-66 258.1 377 65.0
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.4e-66 257.7 365 67.1
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.4e-66 256.9 278 78.4
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 4.0e-66 256.1 377 65.0
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 4.0e-66 256.1 319 70.5
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 2.6e-65 253.4 385 52.5
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 4.5e-65 252.7 385 54.0
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 9.3e-63 245.0 370 64.9
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 1.3e-61 241.1 319 71.2
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 3.7e-59 233.0 183 70.5
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.2e-57 228.0 326 70.2
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 2.6e-57 226.9 369 61.0
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 1.9e-55 220.7 327 68.8
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 9.3e-55 218.4 178 65.7
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 2.3e-53 213.8 167 67.1
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.6e-51 207.6 367 59.1
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 3.7e-51 206.5 266 71.4
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 2.6e-49 200.3 309 63.4
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 2.2e-48 197.2 358 60.6
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.6e-46 191.0 357 58.5
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 4.8e-43 179.5 173 58.4
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.4e-42 177.9 381 53.0
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 1.8e-42 177.6 307 61.9
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 2.0e-41 174.1 132 83.3
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.9e-40 170.2 132 78.8
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 8.5e-40 168.7 132 75.8
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 9.3e-39 165.2 369 52.8
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 3.0e-37 160.2 315 57.8
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 6.7e-37 159.1 308 57.5
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.3e-28 130.2 132 62.9
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 6.3e-27 125.9 155 47.1
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 1.1e-26 125.2 357 51.5
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 5.3e-26 122.9 115 67.0
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 3.2e-23 113.6 242 62.0
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 2.1e-22 110.9 267 56.9
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.8e-19 100.5 95 56.8
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 6.3e-19 99.4 225 54.7
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 4.1e-18 96.7 415 43.6
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 9.4e-15 85.5 59 91.5
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 8.0e-14 82.4 56 94.6
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 4.0e-13 80.1 56 92.9
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 9.1e-10 68.9 84 66.7


User provided reference genes

Program Settings