Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 2.5e-228 795.0 379 100.0
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 4.7e-203 711.1 377 87.3
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 1.8e-199 699.1 379 87.1
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 5.0e-197 691.0 380 86.3
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 7.2e-196 687.2 374 83.2
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 1.2e-195 686.4 377 84.1
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 1.6e-195 686.0 379 83.6
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 2.1e-195 685.6 379 82.8
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 3.6e-195 684.9 379 82.8
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 3.6e-195 684.9 378 83.6
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 7.5e-193 677.2 379 82.1
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 7.5e-193 677.2 379 83.4
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.3e-192 676.4 379 83.1
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 1.3e-192 676.4 379 83.1
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 3.7e-192 674.9 379 83.1
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 4.8e-192 674.5 379 82.6
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 2.7e-190 668.7 379 82.1
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 5.0e-189 664.5 381 81.6
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 1.5e-188 662.9 388 80.4
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 3.2e-188 661.8 380 80.5
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 7.2e-188 660.6 379 79.9
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 1.2e-187 659.8 376 82.4
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 2.7e-187 658.7 378 81.2
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 3.6e-187 658.3 379 79.2
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 1.4e-186 656.4 378 81.2
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 1.3e-184 649.8 377 78.0
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 1.3e-184 649.8 377 78.0
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 1.7e-184 649.4 379 78.9
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 3.7e-184 648.3 379 79.4
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 4.8e-184 647.9 377 78.0
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 1.1e-183 646.7 377 77.7
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 1.4e-183 646.4 377 78.0
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 3.1e-183 645.2 383 78.1
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 3.1e-183 645.2 377 77.7
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 4.1e-183 644.8 380 78.9
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 1.7e-181 639.4 375 77.1
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 5.0e-181 637.9 377 77.2
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 5.0e-181 637.9 377 77.2
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 5.0e-181 637.9 377 77.2
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 5.0e-181 637.9 381 75.9
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 1.1e-180 636.7 377 77.2
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 4.2e-180 634.8 377 76.9
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 5.5e-180 634.4 375 76.5
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 9.5e-180 633.6 378 77.8
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 2.8e-179 632.1 383 77.5
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 3.6e-179 631.7 383 76.2
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 1.0e-178 630.2 381 76.9
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.8e-178 629.4 418 72.0
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 6.8e-178 627.5 377 77.7
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 6.8e-178 627.5 386 77.2
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 3.4e-177 625.2 374 76.2
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 5.7e-177 624.4 379 75.7
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 7.5e-177 624.0 377 77.2
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.3e-176 623.2 377 77.5
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 1.7e-176 622.9 394 76.4
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.8e-176 622.1 377 76.9
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 1.4e-175 619.8 341 84.5
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 1.8e-175 619.4 380 76.8
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 7.0e-175 617.5 379 75.2
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 1.2e-174 616.7 380 76.1
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 2.0e-174 615.9 370 75.7
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 3.5e-174 615.1 373 77.7
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 5.0e-173 611.3 379 76.8
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 8.6e-173 610.5 380 77.1
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 1.1e-172 610.1 384 76.0
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 3.0e-170 602.1 339 82.9
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 4.0e-170 601.7 356 79.8
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 6.8e-170 600.9 379 75.2
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.0e-169 599.4 361 78.4
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 2.0e-169 599.4 369 77.0
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 4.4e-169 598.2 327 85.6
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 1.1e-167 593.6 408 68.9
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 1.4e-167 593.2 379 74.9
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 2.4e-167 592.4 388 74.2
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 2.7e-166 589.0 379 73.9
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 5.0e-165 584.7 383 73.9
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 1.1e-164 583.6 379 73.6
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 1.2e-163 580.1 384 71.4
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 1.1e-162 577.0 335 80.9
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 1.8e-162 576.2 378 73.0
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.5e-161 573.2 369 75.1
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 1.5e-161 573.2 370 71.6
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 1.9e-159 566.2 368 70.7
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 3.2e-159 565.5 379 71.5
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 7.0e-159 564.3 325 79.4
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.5e-158 562.0 374 71.7
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 4.6e-158 561.6 335 78.2
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 1.0e-157 560.5 363 73.3
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 8.6e-157 557.4 376 70.7
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 1.5e-156 556.6 380 70.5
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 4.3e-156 555.1 376 71.0
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 5.6e-156 554.7 377 69.0
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 1.2e-155 553.5 373 71.0
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 1.1e-154 550.4 376 70.5
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 1.8e-154 549.7 376 69.9
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 2.3e-154 549.3 376 70.2
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 5.2e-154 548.1 376 69.7
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 7.5e-153 544.3 376 68.9
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 1.3e-152 543.5 370 68.9
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 1.4e-151 540.0 376 68.1
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 4.1e-151 538.5 370 70.0
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 6.0e-150 534.6 281 86.1
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.0e-149 533.9 379 67.8
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 3.3e-148 528.9 379 68.3
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 3.3e-148 528.9 379 68.3
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 2.4e-146 522.7 357 71.7
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 5.1e-141 505.0 376 65.2
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 6.6e-141 504.6 379 67.8
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 1.5e-140 503.4 379 62.0
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 9.6e-140 500.7 379 63.1
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 8.1e-139 497.7 253 88.9
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 6.2e-131 471.5 257 83.3
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 2.0e-129 466.5 366 61.7
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 7.6e-129 464.5 253 81.4
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 4.9e-128 461.8 387 55.8
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 2.3e-125 453.0 281 75.8
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 3.0e-125 452.6 377 57.6
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 6.7e-125 451.4 382 57.3
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 2.8e-123 446.0 387 54.3
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 3.4e-113 412.5 306 65.4
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.7e-112 410.2 380 55.3
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 1.4e-111 407.1 224 83.0
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 1.2e-97 360.9 309 57.6
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 1.6e-86 323.9 536 36.4
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 1.2e-81 307.8 220 71.4
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.1e-79 301.2 219 67.1
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 2.2e-75 287.0 213 67.1
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.2e-73 281.2 147 86.4
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 8.5e-72 275.0 144 86.1
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 1.9e-71 273.9 275 52.4
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 2.0e-68 263.8 366 38.0
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 5.5e-63 245.7 153 75.8
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 5.7e-60 235.7 146 76.0
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 9.2e-58 228.4 134 74.6
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.9e-47 194.1 139 64.7
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 2.0e-44 184.1 111 73.0
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 9.5e-39 165.2 286 32.9
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 3.0e-32 143.7 92 67.4
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 8.1e-30 135.6 146 54.1
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 1.1e-29 135.2 286 29.7
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 5.1e-24 116.3 59 89.8
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 2.8e-22 110.5 57 82.5
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 3.1e-21 107.1 66 74.2
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 3.0e-16 90.5 52 71.2
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 1.5e-15 88.2 76 56.6
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 4.8e-14 83.2 48 83.3
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.1e-13 82.0 57 70.2
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 1.8e-08 64.7 40 67.5


User provided reference genes

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