Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 3.6e-170 602.4 581 100.0
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 1.2e-122 444.5 334 84.7
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 1.1e-115 421.4 334 80.5
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 2.1e-114 417.2 334 80.2
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 1.8e-113 414.1 335 80.0
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 1.5e-112 411.0 334 79.6
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 2.6e-112 410.2 335 80.0
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 3.4e-112 409.8 334 79.9
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 4.4e-112 409.5 335 79.7
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 5.8e-112 409.1 336 79.5
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 5.8e-112 409.1 336 79.5
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 1.4e-110 404.4 335 79.4
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 7.1e-110 402.1 334 77.5
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 3.5e-109 399.8 320 81.2
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 2.3e-108 397.1 334 79.3
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 1.9e-107 394.0 313 82.4
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 2.5e-107 393.7 336 77.7
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 3.3e-107 393.3 337 78.0
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 4.3e-107 392.9 334 76.6
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 5.6e-107 392.5 303 83.5
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 4.8e-106 389.4 335 77.0
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 3.1e-105 386.7 319 80.3
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 6.9e-105 385.6 335 76.7
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 6.9e-105 385.6 337 77.4
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 9.0e-105 385.2 335 76.4
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 3.4e-104 383.3 337 77.2
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 3.4e-104 383.3 331 77.9
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 4.5e-104 382.9 337 76.9
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 5.8e-104 382.5 298 76.8
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 2.2e-103 380.6 335 76.1
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 2.9e-103 380.2 307 81.4
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 3.8e-103 379.8 335 75.5
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 3.8e-103 379.8 334 75.7
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 6.4e-103 379.0 319 78.4
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 6.4e-103 379.0 347 75.2
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 8.4e-103 378.6 306 82.4
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 1.1e-102 378.3 296 82.4
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 1.1e-102 378.3 336 75.9
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 1.9e-102 377.5 296 83.1
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 1.9e-102 377.5 304 81.9
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 2.4e-102 377.1 307 81.1
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 2.4e-102 377.1 318 78.0
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 9.3e-102 375.2 296 83.4
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 1.2e-101 374.8 334 74.9
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 1.6e-101 374.4 327 76.8
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 1.6e-101 374.4 303 81.8
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 2.1e-101 374.0 335 74.6
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 4.6e-101 372.9 320 77.8
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.3e-100 371.3 296 82.8
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.3e-100 371.3 302 80.1
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 1.3e-100 371.3 318 77.7
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.8e-100 370.9 296 82.8
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 2.3e-100 370.5 334 74.3
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 3.0e-100 370.2 295 81.0
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 3.0e-100 370.2 309 79.3
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.5e-99 367.1 334 74.3
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 5.6e-99 365.9 334 73.7
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 9.6e-99 365.2 334 74.3
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 9.6e-99 365.2 324 76.2
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.8e-98 363.6 334 74.0
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 2.8e-98 363.6 335 74.0
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 3.7e-98 363.2 299 81.6
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 3.7e-98 363.2 302 80.1
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 3.7e-98 363.2 334 74.0
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 4.8e-98 362.8 305 79.3
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 4.8e-98 362.8 334 73.4
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 3.1e-97 360.1 334 73.1
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 3.1e-97 360.1 305 78.4
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 1.2e-96 358.2 318 75.2
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 1.2e-96 358.2 318 68.2
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 2.6e-96 357.1 320 75.0
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 3.4e-96 356.7 302 77.5
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 4.5e-96 356.3 299 79.3
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 2.2e-95 354.0 353 56.9
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 3.8e-95 353.2 306 76.5
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 3.8e-95 353.2 310 74.8
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 4.9e-95 352.8 303 78.2
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 4.9e-95 352.8 337 57.9
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 4.2e-94 349.7 342 71.1
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 5.5e-94 349.4 341 71.6
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 7.1e-94 349.0 303 61.1
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 7.1e-94 349.0 292 80.1
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 4.6e-93 346.3 330 71.8
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 6.0e-93 345.9 335 72.2
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 1.8e-92 344.4 335 72.2
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 2.3e-92 344.0 335 71.6
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 3.0e-92 343.6 319 73.7
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 1.4e-89 334.7 335 71.0
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 2.4e-89 334.0 318 72.3
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 6.5e-87 325.9 333 71.2
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 2.5e-86 323.9 336 69.0
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 4.1e-81 306.6 293 75.4
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 6.9e-81 305.8 307 70.7
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 7.4e-75 285.8 292 70.9
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 1.8e-73 281.2 514 66.1
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 3.1e-73 280.4 291 68.0
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 1.2e-69 268.5 283 71.0
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 9.1e-65 252.3 211 85.3
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 5.5e-62 243.0 183 68.9
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.0e-55 222.2 135 78.5
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 1.6e-53 214.9 146 69.9
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 1.8e-52 211.5 171 62.0
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 3.0e-52 210.7 196 83.2
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 2.8e-42 177.6 102 86.3
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 8.3e-42 176.0 101 88.1
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 9.1e-41 172.6 123 69.9
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 2.2e-34 151.4 262 50.8
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 4.1e-33 147.1 303 38.3
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 8.6e-31 139.4 269 48.3
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 2.0e-27 128.3 266 44.4
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 9.8e-27 125.9 82 75.6
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 1.9e-22 111.7 77 72.7
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 2.1e-21 108.2 73 74.0
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 1.5e-19 102.1 92 60.9
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 1.5e-11 75.5 77 55.8
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 5.1e-07 60.5 31 96.8
Lj5g0013792 Lotus japonicus HOM05D006642 ORTHO05D008856 8.6e-07 59.7 48 58.3
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 2.5e-06 58.2 113 24.8
MBI02_g40094_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D027104 3.3e-06 57.8 31 93.5
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 9.6e-06 56.2 113 26.5


User provided reference genes

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