Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 6.6e-155 550.8 312 100.0
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.3e-94 350.5 311 65.9
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 1.5e-93 347.1 222 79.3
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.0e-91 340.9 222 78.8
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 6.3e-89 331.6 221 76.0
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 5.4e-88 328.6 226 78.3
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 7.0e-88 328.2 223 77.6
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 9.1e-88 327.8 225 77.8
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 1.5e-85 320.5 313 57.8
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 4.2e-85 318.9 222 73.0
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 7.2e-85 318.2 221 75.1
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 9.5e-85 317.8 306 59.8
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.2e-84 317.4 221 75.1
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 3.6e-84 315.8 220 75.5
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 4.7e-84 315.5 204 82.4
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 1.0e-83 314.3 297 60.9
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 1.8e-83 313.5 222 72.5
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 1.8e-83 313.5 297 59.6
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 4.4e-82 308.9 300 59.0
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 5.7e-82 308.5 218 72.9
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 2.2e-81 306.6 223 70.9
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 2.8e-81 306.2 220 70.9
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 2.8e-81 306.2 220 70.9
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 2.8e-81 306.2 220 70.9
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 4.9e-81 305.4 223 71.7
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 1.1e-80 304.3 224 72.8
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 1.1e-80 304.3 226 71.2
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.1e-80 304.3 220 71.4
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 2.4e-80 303.1 220 71.4
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 2.4e-80 303.1 219 71.2
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 9.2e-80 301.2 222 69.8
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 9.2e-80 301.2 224 70.5
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 1.2e-79 300.8 217 71.9
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 1.6e-79 300.4 222 70.7
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 2.0e-79 300.1 222 70.3
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 2.0e-79 300.1 319 54.9
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 1.7e-78 297.0 224 71.0
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 1.7e-78 297.0 221 71.5
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.9e-78 296.2 223 69.1
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 6.6e-78 295.0 298 56.7
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 1.5e-77 293.9 221 70.1
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 1.9e-77 293.5 223 68.2
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.5e-77 293.1 218 69.3
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 5.6e-77 292.0 224 67.4
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 5.6e-77 292.0 224 67.9
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 7.3e-77 291.6 183 78.7
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 2.1e-76 290.0 221 68.8
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 3.6e-76 289.3 282 58.9
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 6.1e-76 288.5 224 67.0
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 6.1e-76 288.5 252 62.7
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 8.0e-76 288.1 217 68.7
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 1.8e-75 287.0 223 66.4
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 1.8e-75 287.0 224 66.5
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 2.3e-75 286.6 223 65.9
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 2.3e-75 286.6 223 66.8
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 2.3e-75 286.6 217 68.2
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 3.0e-75 286.2 224 66.5
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 6.8e-75 285.0 219 68.9
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 8.9e-75 284.6 224 66.1
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 2.6e-74 283.1 220 68.2
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 4.4e-74 282.3 214 69.2
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 5.7e-74 282.0 217 68.2
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 7.5e-74 281.6 219 66.7
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 9.8e-74 281.2 215 68.4
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 1.3e-73 280.8 219 66.7
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 1.3e-73 280.8 219 66.7
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.7e-73 280.4 217 67.3
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 4.9e-73 278.9 223 65.0
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 4.9e-73 278.9 223 65.9
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 6.4e-73 278.5 223 65.5
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 1.4e-72 277.3 218 66.1
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 1.4e-72 277.3 204 70.6
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 1.8e-72 276.9 224 64.3
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 2.4e-72 276.6 216 68.1
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 1.2e-71 274.2 213 66.7
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 1.2e-71 274.2 217 66.8
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 3.5e-71 272.7 219 66.2
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.3e-70 270.8 218 65.1
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 1.7e-70 270.4 222 63.1
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 5.0e-70 268.9 231 63.6
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 6.6e-70 268.5 220 64.1
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 8.6e-70 268.1 165 81.2
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.9e-69 266.9 218 64.2
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 1.9e-69 266.9 164 81.7
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 3.3e-69 266.2 218 61.9
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 3.3e-69 266.2 215 64.2
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 4.3e-69 265.8 215 64.2
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 5.6e-69 265.4 220 63.2
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 7.3e-69 265.0 216 63.0
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 9.5e-69 264.6 229 62.0
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 1.6e-68 263.8 242 59.5
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.8e-68 263.1 198 71.7
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 2.3e-67 260.0 210 63.8
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 2.3e-67 260.0 221 62.9
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 5.2e-67 258.8 210 63.8
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 5.2e-67 258.8 192 67.7
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 1.2e-66 257.7 220 61.4
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 1.2e-66 257.7 219 62.6
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.5e-66 257.3 210 62.9
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 2.6e-66 256.5 223 57.8
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 3.4e-66 256.1 210 63.3
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 4.4e-66 255.8 220 60.9
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 1.7e-65 253.8 205 65.4
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 1.4e-64 250.8 180 76.1
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 4.1e-64 249.2 166 75.9
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 9.2e-64 248.1 162 74.7
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 1.6e-63 247.3 223 57.8
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 1.2e-60 237.7 202 61.9
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 4.7e-60 235.7 220 58.6
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 1.4e-59 234.2 221 57.9
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 1.8e-59 233.8 166 74.1
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 2.3e-59 233.4 237 55.3
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 3.4e-58 229.6 227 52.9
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 4.4e-58 229.2 215 57.2
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 7.5e-58 228.4 216 56.0
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 1.6e-55 220.7 226 55.8
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 2.5e-53 213.4 220 53.2
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 1.6e-47 194.1 145 69.7
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 2.7e-47 193.4 163 58.3
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 9.9e-42 174.9 162 54.9
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 2.9e-41 173.3 122 72.1
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 1.1e-40 171.4 176 54.0
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 1.3e-36 157.9 230 45.7
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 3.4e-34 149.8 138 59.4
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.6e-31 141.0 121 60.3
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 8.7e-30 135.2 92 69.6
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 9.6e-29 131.7 92 67.4
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 1.4e-27 127.9 104 61.5
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 3.1e-27 126.7 184 46.2
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 6.9e-27 125.6 177 39.5
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 1.9e-24 117.5 155 50.3
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 3.9e-22 109.8 136 48.5
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 8.4e-17 92.0 47 87.2
Cc02_g24380 Coffea canephora HOM05D005088 ORTHO05D006914 1.7e-09 67.8 58 63.8
SMO235G0038 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 1.9e-08 64.3 94 44.7
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 2.3e-06 57.4 200 30.0


User provided reference genes

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