Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 1.4e-148 529.6 270 100.0
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 9.9e-123 443.7 268 85.8
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 6.4e-122 441.0 270 84.4
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 3.5e-120 435.3 270 83.3
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 3.0e-119 432.2 269 79.2
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 1.9e-118 429.5 269 79.6
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 4.3e-118 428.3 270 81.1
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.4e-116 423.3 270 80.0
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 4.0e-116 421.8 270 79.3
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 1.2e-115 420.2 270 80.0
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 2.0e-115 419.5 270 79.6
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 2.0e-115 419.5 270 79.6
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 7.6e-115 417.5 271 80.8
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 9.9e-115 417.2 270 78.9
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 9.9e-115 417.2 268 79.9
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 1.3e-114 416.8 269 78.8
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 1.3e-114 416.8 271 79.7
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.3e-114 416.8 270 78.5
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 2.2e-114 416.0 272 79.4
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 3.8e-114 415.2 269 79.9
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 6.4e-114 414.5 269 78.1
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 8.4e-114 414.1 270 79.3
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 1.1e-113 413.7 295 73.6
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 1.1e-113 413.7 270 79.3
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 1.4e-113 413.3 269 78.4
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.4e-113 413.3 272 79.4
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 2.4e-113 412.5 270 79.6
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 2.4e-113 412.5 270 78.1
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 3.2e-113 412.1 270 79.3
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 3.2e-113 412.1 270 78.1
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 3.2e-113 412.1 270 78.1
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 9.3e-113 410.6 268 79.5
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 1.6e-112 409.8 270 78.5
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 1.6e-112 409.8 268 77.2
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 3.5e-112 408.7 270 78.5
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 7.8e-112 407.5 270 77.4
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 7.8e-112 407.5 271 78.6
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 7.8e-112 407.5 269 76.6
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 1.0e-111 407.1 269 75.5
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 1.0e-111 407.1 270 79.3
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 1.7e-111 406.4 269 79.2
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 2.3e-111 406.0 270 78.1
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 3.9e-111 405.2 283 73.9
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 5.1e-111 404.8 270 75.6
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.1e-111 404.8 270 77.8
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 5.1e-111 404.8 270 77.8
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 1.5e-110 403.3 268 76.1
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 1.5e-110 403.3 272 77.9
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 1.9e-110 402.9 270 75.9
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 2.5e-110 402.5 272 77.6
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 4.3e-110 401.7 270 76.3
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.6e-110 401.4 270 77.4
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 9.6e-110 400.6 270 74.4
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 9.6e-110 400.6 269 75.8
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 9.6e-110 400.6 267 77.5
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.6e-109 399.8 270 75.9
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 1.6e-109 399.8 270 76.3
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 2.1e-109 399.4 270 75.6
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 2.8e-109 399.1 282 74.8
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 2.8e-109 399.1 273 75.5
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 2.8e-109 399.1 269 75.5
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 1.1e-108 397.1 270 75.6
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 1.1e-108 397.1 269 75.1
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 5.3e-108 394.8 268 76.1
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.0e-107 392.9 273 74.7
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.6e-107 392.5 270 74.8
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 2.6e-107 392.5 270 75.2
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 3.4e-107 392.1 270 74.1
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.9e-107 390.6 270 77.0
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.9e-107 390.6 270 74.4
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 9.9e-107 390.6 270 74.4
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.3e-106 390.2 270 75.9
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.7e-106 389.8 270 76.3
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 1.7e-106 389.8 282 71.3
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 2.9e-106 389.0 296 69.3
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 3.8e-106 388.7 269 74.0
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 4.9e-106 388.3 270 74.1
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 1.4e-105 386.7 271 74.5
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 1.9e-105 386.3 271 74.9
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 1.9e-105 386.3 269 74.3
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 5.4e-105 384.8 282 72.7
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 1.2e-104 383.6 269 75.5
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 7.9e-104 380.9 273 72.9
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 5.1e-103 378.3 261 76.6
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 1.1e-102 377.1 269 72.1
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.1e-102 377.1 266 74.4
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 3.3e-102 375.6 340 60.6
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 1.6e-101 373.2 269 72.1
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 2.8e-101 372.5 236 83.1
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 3.7e-101 372.1 270 72.2
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 6.2e-101 371.3 274 71.9
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 6.2e-101 371.3 274 71.9
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.4e-100 369.4 283 70.3
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 4.0e-100 368.6 271 70.5
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 6.9e-100 367.9 270 72.2
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 1.2e-99 367.1 270 70.0
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.5e-99 366.7 258 73.6
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 2.0e-99 366.3 271 71.6
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 2.6e-99 365.9 305 63.9
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 2.6e-99 365.9 305 63.9
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 5.8e-99 364.8 272 72.4
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 1.3e-98 363.6 268 71.6
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 2.9e-98 362.5 270 71.5
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 4.9e-98 361.7 269 70.6
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 6.5e-98 361.3 273 68.9
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 6.5e-98 361.3 329 61.1
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 6.5e-98 361.3 290 65.2
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 8.4e-98 360.9 270 71.5
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 8.4e-98 360.9 274 71.2
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 5.5e-97 358.2 272 71.0
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 1.2e-96 357.1 253 72.7
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 4.6e-96 355.1 231 77.9
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 6.7e-95 351.3 233 78.1
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 2.5e-94 349.4 272 71.0
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 9.6e-94 347.4 233 76.4
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.6e-93 346.7 274 67.5
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 4.8e-93 345.1 271 69.4
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 8.2e-93 344.4 314 61.8
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 2.4e-92 342.8 271 70.5
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 4.1e-92 342.0 331 59.5
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 6.9e-92 341.3 235 73.2
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 3.4e-91 339.0 268 66.4
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 1.3e-90 337.0 231 74.5
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 5.0e-90 335.1 230 73.9
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 8.4e-90 334.3 231 75.3
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 5.7e-86 321.6 273 63.7
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 3.1e-84 315.8 276 63.4
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 6.9e-84 314.7 259 67.2
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 1.4e-81 307.0 365 52.6
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 7.2e-81 304.7 269 63.6
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 9.4e-81 304.3 231 69.7
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 9.7e-78 294.3 234 67.9
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 2.2e-77 293.1 268 60.1
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.8e-77 292.0 285 59.3
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 1.8e-76 290.0 337 51.3
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 3.1e-76 289.3 280 58.9
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 7.2e-73 278.1 198 74.7
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 3.7e-69 265.8 230 60.9
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 6.3e-69 265.0 203 70.4
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 4.5e-67 258.8 260 56.2
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 2.5e-65 253.1 179 74.9
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 5.5e-65 251.9 184 70.1
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.6e-64 250.4 267 52.8
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 3.6e-64 249.2 227 60.8
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 2.3e-63 246.5 264 53.4
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 2.3e-63 246.5 270 53.3
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 1.5e-62 243.8 264 53.8
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 2.6e-62 243.0 173 71.7
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 2.8e-61 239.6 262 52.3
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 5.3e-60 235.3 174 69.5
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.9e-57 226.9 162 73.5
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 1.0e-55 221.1 130 81.5
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 4.0e-55 219.2 161 67.7
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 5.2e-55 218.8 144 75.7
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 8.8e-55 218.0 169 68.6
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 4.1e-52 209.1 256 51.6
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 3.5e-51 206.1 135 76.3
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 5.2e-47 192.2 150 68.0
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 2.0e-46 190.3 267 46.4
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 2.6e-46 189.9 214 51.9
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.1e-44 184.5 202 55.4
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.8e-44 183.7 125 74.4
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 6.8e-39 165.2 231 45.5
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 7.5e-38 161.8 134 65.7
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 1.9e-33 147.1 138 56.5
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 1.2e-32 144.4 178 46.6
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.8e-31 140.6 182 47.8
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 8.9e-31 138.3 164 51.8
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 7.0e-28 128.6 88 75.0
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 3.5e-27 126.3 91 72.5
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 4.7e-24 115.9 149 49.0
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 6.2e-24 115.5 74 77.0
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 1.2e-22 111.3 69 76.8
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.7e-21 107.5 150 44.0
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.6e-19 100.9 67 73.1
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 1.0e-18 98.2 74 67.6
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 4.6e-11 72.8 137 39.4
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 6.6e-10 68.9 90 45.6
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 4.3e-09 66.2 174 32.2
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 5.8e-06 55.8 40 67.5
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 7.6e-06 55.5 34 79.4


User provided reference genes

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