Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 3.7e-163 578.2 298 100.0
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.1e-133 480.3 298 85.2
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 4.3e-127 458.4 299 79.6
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 2.1e-126 456.1 299 78.6
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 6.2e-126 454.5 297 81.8
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 9.9e-124 447.2 296 77.7
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 3.7e-123 445.3 301 79.1
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.1e-122 443.7 297 80.1
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 3.2e-122 442.2 297 79.8
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.7e-121 439.1 297 79.5
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 3.5e-121 438.7 307 75.2
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 7.8e-121 437.6 299 75.9
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.7e-120 436.4 302 77.2
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 3.9e-120 435.3 297 79.5
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 6.6e-120 434.5 291 77.7
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 8.6e-120 434.1 297 77.4
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.9e-119 433.0 322 73.6
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 5.6e-119 431.4 299 76.6
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.2e-118 430.3 300 74.3
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 2.1e-118 429.5 300 74.3
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 2.1e-118 429.5 295 76.6
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 2.8e-118 429.1 301 75.4
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 3.6e-118 428.7 306 75.8
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 4.7e-118 428.3 330 72.7
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 8.1e-118 427.6 303 74.9
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 2.4e-117 426.0 298 73.5
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 2.4e-117 426.0 302 76.8
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 6.8e-117 424.5 298 73.2
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.5e-116 423.3 297 77.8
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 2.0e-116 422.9 301 75.7
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 3.4e-116 422.2 304 74.7
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 4.4e-116 421.8 301 74.8
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 4.4e-116 421.8 295 76.6
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 1.3e-115 420.2 319 71.5
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 1.7e-115 419.9 319 71.5
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 1.7e-115 419.9 301 74.4
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 2.9e-115 419.1 301 74.4
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 6.4e-115 417.9 300 75.7
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.4e-114 416.8 300 74.0
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 3.2e-114 415.6 364 64.6
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 4.2e-114 415.2 301 73.8
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 5.4e-114 414.8 291 75.6
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.2e-113 413.7 304 73.0
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.6e-113 413.3 299 74.6
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 1.7e-112 409.8 302 73.5
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 5.1e-112 408.3 300 73.0
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 6.6e-112 407.9 304 73.4
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 8.7e-112 407.5 304 72.0
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 1.9e-111 406.4 300 72.7
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 3.3e-111 405.6 299 72.9
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 5.6e-111 404.8 301 72.8
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 5.6e-111 404.8 300 75.3
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 1.3e-110 403.7 300 73.7
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 2.1e-110 402.9 298 73.2
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 8.1e-110 401.0 302 71.9
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 4.0e-109 398.7 368 60.3
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 9.0e-109 397.5 297 72.1
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 1.2e-108 397.1 298 70.5
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 1.5e-108 396.7 307 72.3
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 3.4e-108 395.6 305 71.5
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 1.7e-107 393.3 353 62.9
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 2.2e-107 392.9 294 71.8
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 2.2e-107 392.9 294 71.8
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 2.9e-107 392.5 294 71.8
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 2.9e-107 392.5 251 81.7
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 4.9e-107 391.7 296 70.9
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 2.4e-106 389.4 308 70.5
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 7.1e-106 387.9 316 66.5
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 1.0e-104 384.0 265 75.5
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 1.7e-104 383.3 320 66.6
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 3.0e-104 382.5 300 69.0
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 3.0e-104 382.5 282 74.1
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 3.9e-104 382.1 251 81.3
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 2.5e-103 379.4 293 70.0
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 1.3e-102 377.1 313 69.0
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.4e-101 373.6 291 70.8
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 5.3e-101 371.7 282 70.2
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 9.0e-101 370.9 299 67.9
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 2.0e-100 369.8 251 77.3
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 2.2e-99 366.3 277 72.2
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 2.9e-99 365.9 326 63.2
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 1.4e-98 363.6 263 74.9
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 1.4e-98 363.6 256 76.6
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 4.2e-98 362.1 274 71.5
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.7e-97 359.4 369 57.5
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 1.8e-96 356.7 287 68.3
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 6.7e-96 354.8 341 60.1
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 1.9e-95 353.2 255 74.5
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 3.1e-93 345.9 295 66.1
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 6.9e-93 344.7 318 61.3
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 1.5e-92 343.6 256 74.6
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 1.3e-91 340.5 244 77.5
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 3.2e-90 335.9 257 69.6
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 9.3e-90 334.3 231 75.8
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 4.6e-89 332.0 333 58.0
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 3.9e-88 328.9 253 71.9
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 1.1e-87 327.4 292 63.0
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 1.1e-87 327.4 208 81.7
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 9.6e-87 324.3 214 78.5
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 3.1e-85 319.3 299 63.2
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 5.3e-85 318.5 279 64.2
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 6.9e-85 318.2 244 71.7
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 2.0e-84 316.6 299 61.9
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 3.4e-84 315.8 301 61.5
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 8.4e-83 311.2 325 55.7
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 7.2e-82 308.1 251 70.1
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 9.3e-82 307.8 209 77.5
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 1.2e-81 307.4 240 68.8
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 6.7e-80 301.6 257 66.1
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 1.9e-79 300.1 267 63.7
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 4.3e-79 298.9 290 56.6
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.3e-75 287.3 295 58.0
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 3.9e-72 275.8 184 78.8
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 1.3e-70 270.8 200 68.0
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.1e-69 267.7 291 54.6
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.4e-69 266.5 227 63.4
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 3.8e-67 259.2 165 80.6
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 8.5e-67 258.1 225 65.8
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 9.4e-66 254.6 294 52.0
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 1.6e-65 253.8 342 46.5
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 1.6e-60 237.3 156 80.1
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 7.2e-58 228.4 202 62.4
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 1.7e-51 207.2 130 83.1
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 2.2e-51 206.8 168 66.1
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 6.6e-35 152.1 138 63.0
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 7.5e-31 138.7 332 33.4
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 3.0e-27 126.7 300 31.7
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 1.9e-21 107.5 88 65.9
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 7.3e-18 95.5 326 29.8
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 3.2e-13 80.1 76 57.9
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 1.3e-11 74.7 57 64.9
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 3.3e-10 70.1 52 73.1
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 5.6e-10 69.3 178 33.7
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 2.3e-08 63.9 52 59.6
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 1.5e-07 61.2 71 54.9
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.3e-06 58.2 59 62.7


User provided reference genes

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