Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 8.0e-100 367.1 184 100.0
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 7.0e-88 327.4 184 88.6
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 6.6e-86 320.9 184 84.8
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 1.9e-85 319.3 184 84.8
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 4.3e-85 318.2 184 85.3
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 5.6e-85 317.8 184 84.2
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 5.6e-85 317.8 184 84.2
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 9.5e-85 317.0 184 84.2
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-84 316.6 184 84.2
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.6e-84 316.2 184 84.2
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 3.1e-83 312.0 184 83.2
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 4.0e-83 311.6 184 81.5
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 5.2e-83 311.2 178 84.3
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 6.8e-83 310.8 184 81.5
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.5e-82 309.7 184 82.6
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 2.6e-82 308.9 184 81.5
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 3.4e-82 308.5 184 80.4
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.4e-82 308.5 184 81.0
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 3.4e-82 308.5 184 81.0
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 7.5e-82 307.4 184 81.5
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 9.8e-82 307.0 184 80.4
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.3e-81 306.6 177 84.7
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-81 306.6 177 84.7
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.7e-81 306.2 184 81.0
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.7e-81 306.2 184 81.0
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.9e-81 305.4 184 82.1
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 4.9e-81 304.7 184 81.5
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 6.4e-81 304.3 184 80.4
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 8.3e-81 303.9 182 79.7
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 8.3e-81 303.9 184 78.8
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 8.3e-81 303.9 184 78.8
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 8.3e-81 303.9 182 79.7
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.1e-80 303.5 182 79.7
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 1.9e-80 302.8 184 80.4
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 1.9e-80 302.8 184 80.4
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 1.9e-80 302.8 184 81.0
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 1.9e-80 302.8 183 78.7
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 2.4e-80 302.4 182 79.7
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 3.2e-80 302.0 184 79.3
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 4.1e-80 301.6 184 80.4
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 9.2e-80 300.4 185 80.0
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.6e-79 299.7 184 79.3
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.6e-79 299.7 184 78.8
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 2.1e-79 299.3 184 79.9
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 2.1e-79 299.3 184 80.4
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 2.7e-79 298.9 181 79.6
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 4.6e-79 298.1 184 78.3
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 1.3e-78 296.6 184 78.3
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 1.3e-78 296.6 181 79.0
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 3.9e-78 295.0 184 78.8
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 3.9e-78 295.0 184 78.8
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 3.9e-78 295.0 180 78.9
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 8.6e-78 293.9 184 75.5
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 2.5e-77 292.4 182 77.5
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 7.3e-77 290.8 182 78.0
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 9.5e-77 290.4 184 76.1
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 9.5e-77 290.4 184 77.2
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.6e-76 289.7 184 77.2
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.1e-76 289.3 182 76.9
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 2.8e-76 288.9 184 76.6
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 3.6e-76 288.5 181 75.1
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 4.7e-76 288.1 185 77.8
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 6.2e-76 287.7 184 74.5
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 1.8e-75 286.2 182 76.9
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 1.8e-75 286.2 184 73.9
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 6.8e-75 284.3 184 73.9
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 6.8e-75 284.3 182 75.8
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 8.9e-75 283.9 182 75.3
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 1.2e-74 283.5 182 75.8
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.5e-74 283.1 184 73.9
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 2.6e-74 282.3 178 75.8
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 2.6e-74 282.3 184 73.9
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.6e-74 282.3 184 74.5
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 3.4e-74 282.0 184 71.7
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 3.4e-74 282.0 182 74.7
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 7.6e-74 280.8 177 74.0
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 7.6e-74 280.8 182 75.3
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 9.9e-74 280.4 177 75.1
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.3e-73 280.0 184 71.7
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.9e-73 278.9 184 73.9
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.7e-73 278.5 182 74.2
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 6.4e-73 277.7 184 73.4
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 8.3e-73 277.3 182 73.6
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.4e-72 275.8 183 72.7
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 7.1e-72 274.2 184 70.1
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 7.1e-72 274.2 178 75.3
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 7.1e-72 274.2 182 70.3
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 7.1e-72 274.2 182 70.3
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 7.1e-72 274.2 182 70.3
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 7.1e-72 274.2 178 72.5
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 1.2e-71 273.5 182 69.2
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 2.1e-71 272.7 178 74.2
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 3.5e-71 271.9 184 70.1
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.6e-71 271.6 184 69.0
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 4.6e-71 271.6 180 72.8
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 6.0e-71 271.2 178 74.7
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 7.8e-71 270.8 182 69.2
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 7.8e-71 270.8 182 69.2
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.0e-70 270.4 180 71.1
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 3.0e-70 268.9 184 68.5
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 3.0e-70 268.9 185 69.2
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 3.0e-70 268.9 185 69.7
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 3.9e-70 268.5 193 68.4
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 3.9e-70 268.5 184 69.6
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.1e-69 266.9 184 69.0
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.1e-69 266.9 177 73.4
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.5e-69 266.5 185 71.4
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.5e-69 266.5 187 69.5
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 2.5e-69 265.8 185 69.2
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 3.3e-69 265.4 177 68.4
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 3.3e-69 265.4 179 70.4
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 5.6e-69 264.6 182 68.7
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 5.6e-69 264.6 184 69.0
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 5.6e-69 264.6 182 69.2
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 5.6e-69 264.6 178 68.5
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.2e-68 263.5 183 69.9
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 2.1e-68 262.7 184 68.5
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 8.1e-68 260.8 185 67.6
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.8e-67 259.6 178 68.5
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 2.4e-67 259.2 177 72.3
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 6.8e-67 257.7 170 74.1
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 7.6e-66 254.2 179 69.3
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 1.7e-65 253.1 177 69.5
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 8.4e-65 250.8 179 67.6
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 4.2e-64 248.4 180 66.7
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 9.3e-64 247.3 184 65.8
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 2.3e-62 242.7 179 65.4
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 2.1e-60 236.1 186 60.8
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 4.0e-59 231.9 180 64.4
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 1.4e-56 223.4 179 61.5
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 2.4e-56 222.6 171 70.2
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 4.8e-52 208.4 180 58.9
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 1.4e-51 206.8 182 57.7
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.1e-47 193.0 121 76.0
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 3.5e-47 192.2 184 54.9
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.8e-46 189.9 116 76.7
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.9e-41 172.6 197 48.2
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 2.1e-39 166.4 179 43.6
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 1.1e-35 154.1 159 49.1
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 6.9e-27 124.8 99 62.6
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 5.9e-26 121.7 76 76.3
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.0e-25 120.9 109 57.8
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 3.6e-15 85.9 165 32.1
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 1.0e-14 84.3 57 75.4
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 4.1e-11 72.4 59 57.6
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 7.0e-11 71.6 55 60.0
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 1.9e-08 63.5 38 78.9


User provided reference genes

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