Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.540 Acer truncatum HOM05D004707 ORTHO05D005837 1.6e-236 822.4 428 100.0
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 4.1e-155 552.0 440 67.7
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 9.8e-141 504.2 430 64.0
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 7.7e-138 494.6 431 62.4
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.3e-137 493.8 436 64.2
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 3.8e-137 492.3 436 64.0
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 6.6e-137 491.5 439 62.2
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 9.5e-136 487.6 429 64.1
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 1.6e-135 486.9 440 62.7
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 2.8e-135 486.1 439 61.0
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 3.6e-135 485.7 431 62.4
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 3.6e-135 485.7 412 64.3
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 8.0e-135 484.6 420 64.5
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.3e-134 483.0 420 64.3
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 2.2e-132 476.5 368 67.7
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 2.8e-132 476.1 422 60.0
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.8e-132 476.1 436 61.9
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 1.4e-131 473.8 420 61.4
Cpa.g.sc11.45 Carica papaya HOM05D004707 ORTHO05D005837 1.8e-131 473.4 428 60.5
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 5.9e-130 468.4 328 72.6
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 6.6e-129 464.9 424 61.3
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.5e-128 463.8 424 61.3
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 1.4e-126 457.2 428 59.3
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 4.0e-126 455.7 441 57.4
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 6.8e-126 454.9 422 58.5
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 2.0e-125 453.4 437 60.9
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 3.7e-124 449.1 424 60.4
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 6.4e-124 448.4 439 58.1
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 1.4e-123 447.2 386 60.9
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.4e-123 447.2 430 58.6
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 2.4e-123 446.4 354 65.8
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 5.4e-123 445.3 385 60.5
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 1.2e-122 444.1 389 60.4
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 2.7e-122 443.0 348 65.2
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 7.8e-122 441.4 385 60.0
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.3e-121 439.9 344 68.9
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 8.6e-121 438.0 404 58.9
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 3.3e-120 436.0 415 57.1
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 4.3e-120 435.6 407 58.5
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 2.1e-119 433.3 388 58.5
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 2.1e-119 433.3 428 56.1
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 2.8e-119 433.0 388 59.0
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 3.6e-119 432.6 415 57.6
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 4.7e-119 432.2 317 71.6
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 6.2e-119 431.8 432 57.4
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 6.2e-119 431.8 412 59.0
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.1e-118 431.0 412 58.5
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 3.1e-118 429.5 326 67.2
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 4.0e-118 429.1 424 56.1
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 1.5e-117 427.2 442 55.7
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 7.5e-117 424.9 388 58.5
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 1.3e-116 424.1 387 60.2
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 2.9e-116 422.9 430 56.0
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 3.7e-116 422.5 362 61.3
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 6.4e-116 421.8 419 55.6
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 6.4e-116 421.8 439 54.4
TPR.G14976 Trifolium pratense HOM05D004707 ORTHO05D005837 2.4e-115 419.9 336 64.3
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 3.2e-115 419.5 414 55.3
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 4.1e-115 419.1 357 62.5
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 1.0e-113 414.5 399 57.6
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 2.3e-113 413.3 485 51.1
Psat4g156520 Pisum sativum HOM05D004707 ORTHO05D005837 1.9e-112 410.2 416 53.6
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 2.5e-112 409.8 303 68.0
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 1.6e-111 407.1 290 69.3
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 8.1e-111 404.8 348 60.6
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 1.1e-110 404.4 326 64.4
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 1.4e-110 404.1 414 54.8
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 8.9e-110 401.4 355 60.3
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 2.0e-109 400.2 284 69.4
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 4.4e-109 399.1 386 55.2
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 5.8e-109 398.7 284 69.4
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 5.8e-109 398.7 350 59.7
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 7.5e-109 398.3 439 51.3
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 3.7e-108 396.0 322 64.0
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 3.7e-108 396.0 322 64.0
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 4.9e-108 395.6 322 64.0
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 6.4e-108 395.2 295 69.8
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 7.8e-106 388.3 405 54.1
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 1.3e-105 387.5 422 51.2
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 1.7e-105 387.1 370 57.6
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 8.6e-105 384.8 423 52.5
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 2.1e-103 380.2 431 50.6
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 2.8e-103 379.8 433 51.3
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 6.2e-103 378.6 287 64.8
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 1.1e-99 367.9 410 51.5
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 5.4e-99 365.5 290 65.5
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 1.3e-97 360.9 419 47.5
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 1.1e-96 357.8 320 58.8
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 1.5e-96 357.5 379 52.2
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 3.1e-94 349.7 433 48.5
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 5.3e-94 349.0 412 51.7
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 1.3e-92 344.4 433 47.8
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 5.4e-91 339.0 412 47.3
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 6.0e-90 335.5 389 48.8
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 8.7e-89 331.6 367 50.7
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 1.1e-88 331.3 321 54.5
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 1.5e-85 320.9 420 47.4
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 3.4e-85 319.7 386 48.4
Nitab4.5_0000200g0180 Nicotiana tabacum HOM05D004707 ORTHO05D005837 4.9e-84 315.8 271 59.4
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 6.0e-82 308.9 415 45.8
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 1.0e-81 308.1 344 48.5
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 1.8e-81 307.4 358 46.9
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 4.3e-80 302.8 247 59.1
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 4.0e-78 296.2 367 48.5
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 3.3e-72 276.6 295 51.5
AT4G00234 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 9.6e-72 275.0 252 55.6
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 5.3e-70 269.2 293 47.4
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 7.6e-69 265.4 271 51.7
MD01G1068400 Malus domestica HOM05D004707 ORTHO05D005837 7.1e-67 258.8 224 64.3
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 9.3e-67 258.5 295 45.8
SEGI_13365 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 1.5e-64 251.1 366 42.3
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 7.4e-56 222.2 224 47.3
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.7e-55 221.1 221 49.3
AagrBONN_evm.TU.Sc2ySwM_344.1481 Anthoceros agrestis HOM05D004707 ORTHO05D005837 2.9e-52 210.3 250 45.6
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 4.2e-51 206.5 256 46.5
Atru.ctg942.22 Acer truncatum HOM05D004707 ORTHO05D005837 1.4e-33 148.3 135 60.0
Rhsim05G0021600 Rhododendron simsii HOM05D004707 ORTHO05D005837 2.7e-29 134.0 213 37.6
Rhsim05G0008500 Rhododendron simsii HOM05D004707 ORTHO05D005837 3.5e-29 133.7 213 37.1
CDE04G1515 Ceratophyllum demersum HOM05D004707 ORTHO05D005837 1.8e-25 121.3 70 87.1
SMO361G0110 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 1.8e-25 121.3 197 34.0
MBI09_g26550_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 4.0e-25 120.2 107 58.9
Rhsim07G0181500 Rhododendron simsii HOM05D004707 ORTHO05D005837 4.0e-25 120.2 278 32.0
SEGI_38275 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 1.3e-23 115.2 70 78.6
HanXRQChr17g0534491 Helianthus annuus HOM05D004707 ORTHO05D005837 4.1e-22 110.2 141 45.4
HanXRQChr11g0349701 Helianthus annuus HOM05D004707 ORTHO05D005837 1.6e-21 108.2 86 59.3
HanXRQChr09g0268301 Helianthus annuus HOM05D004707 ORTHO05D005837 4.5e-21 106.7 88 56.8
Pp3c3_12760 Physcomitrium patens HOM05D004707 ORTHO05D005837 3.8e-20 103.6 195 30.3
Mapoly0003s0092 Marchantia polymorpha HOM05D004707 ORTHO05D005837 3.3e-19 100.5 190 31.1
AagrBONN_evm.TU.Sc2ySwM_368.2343 Anthoceros agrestis HOM05D004707 ORTHO05D005837 4.2e-19 100.1 206 31.6
Pp3c13_20730 Physcomitrium patens HOM05D004707 ORTHO05D005837 4.7e-18 96.7 185 29.2
Migut.B01027 Erythranthe guttata HOM05D004707 ORTHO05D005837 2.3e-17 94.4 158 36.1
SMO361G0690 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 1.2e-16 92.0 199 31.2
TAR626G0135 Trochodendron aralioides HOM05D004707 ORTHO05D005837 2.6e-16 90.9 69 69.6
Aqoxy5G00594 Aquilegia oxysepala HOM05D001987 ORTHO05D004018 3.4e-16 90.5 56 78.6
Pp3c9_20120 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.3e-15 88.6 70 61.4
Migut.B01028 Erythranthe guttata HOM05D004707 ORTHO05D005837 3.9e-12 77.0 70 55.7
Cre01.g035750 Chlamydomonas reinhardtii HOM05D004707 ORTHO05D005837 1.1e-11 75.5 140 35.7
Lsat_1_v5_gn_4_48081 Lactuca sativa HOM05D004707 ORTHO05D005837 6.2e-10 69.7 129 34.1
Medtr8g031050 Medicago truncatula HOM05D004707 ORTHO05D005837 6.2e-10 69.7 108 35.2
MCO04G456 Micromonas commoda HOM05D002409 ORTHO05D002557 5.2e-09 66.6 165 28.5
Lsat_1_v5_gn_4_48041 Lactuca sativa HOM05D004707 ORTHO05D005837 2.0e-08 64.7 70 48.6
PRCOL_00003228 Prasinoderma coloniale HOM05D002409 ORTHO05D002557 2.0e-08 64.7 146 30.1
Cre01.g035600 Chlamydomonas reinhardtii HOM05D004707 ORTHO05D005837 1.7e-07 61.6 157 31.2
Cre01.g055432 Chlamydomonas reinhardtii HOM05D002409 ORTHO05D002557 3.7e-07 60.5 106 31.1
MBI01_g45834_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 1.4e-06 58.5 35 82.9
MBI18_g40888_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 1.4e-06 58.5 35 82.9
PRCOL_00006850 Prasinoderma coloniale HOM05D004707 ORTHO05D005837 3.2e-06 57.4 142 29.6


User provided reference genes

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