Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.3551 Acer truncatum HOM05D001927 ORTHO05D052553 3.2e-79 298.5 169 100.0
Atru.chr5.3552 Acer truncatum HOM05D001927 ORTHO05D052700 9.1e-66 253.8 176 80.7
Gohir.D04G170400 Gossypium hirsutum HOM05D001927 ORTHO05D001972 3.5e-09 65.9 72 44.4
Gorai.012G158800 Gossypium raimondii HOM05D001927 ORTHO05D001972 3.5e-09 65.9 72 44.4
Cc07_g11700 Coffea canephora HOM05D001927 ORTHO05D001972 4.6e-09 65.5 71 45.1
Gohir.A03G209500 Gossypium hirsutum HOM05D001927 ORTHO05D001972 4.6e-09 65.5 72 43.1
Duzib052G0080 Durio zibethinus HOM05D001927 ORTHO05D001972 1.0e-08 64.3 72 43.1
Duzib248G1388 Durio zibethinus HOM05D001927 ORTHO05D001972 1.0e-08 64.3 73 42.5
Gohir.A04G125500 Gossypium hirsutum HOM05D001927 ORTHO05D001972 1.0e-08 64.3 72 43.1
Thecc.02G044900 Theobroma cacao HOM05D001927 ORTHO05D001972 1.0e-08 64.3 73 39.7
Duzib187G0987 Durio zibethinus HOM05D001927 ORTHO05D001972 1.3e-08 63.9 71 42.3
Duzib132G0855 Durio zibethinus HOM05D001927 ORTHO05D001972 2.3e-08 63.2 73 39.7
Gohir.D02G231200 Gossypium hirsutum HOM05D001927 ORTHO05D001972 2.3e-08 63.2 72 41.7
Gorai.005G258800 Gossypium raimondii HOM05D001927 ORTHO05D001972 2.3e-08 63.2 72 41.7
Gorai.002G206400 Gossypium raimondii HOM05D001927 ORTHO05D001972 3.0e-08 62.8 73 41.1
Thecc.01G006700 Theobroma cacao HOM05D001927 ORTHO05D001972 3.0e-08 62.8 73 39.7
Cpa.g.sc20.203 Carica papaya HOM05D001927 ORTHO05D001972 3.9e-08 62.4 70 42.9
Gohir.A01G174800 Gossypium hirsutum HOM05D001927 ORTHO05D001972 3.9e-08 62.4 73 39.7
Gohir.D12G039300 Gossypium hirsutum HOM05D001927 ORTHO05D001972 3.9e-08 62.4 73 39.7
Gorai.008G041000 Gossypium raimondii HOM05D001927 ORTHO05D001972 3.9e-08 62.4 73 39.7
Nn5g30962 Nelumbo nucifera HOM05D001927 ORTHO05D001972 3.9e-08 62.4 70 42.9
Oeu021982.1 Olea europaea HOM05D001927 ORTHO05D001972 3.9e-08 62.4 69 42.0
Gohir.A12G033500 Gossypium hirsutum HOM05D001927 ORTHO05D001972 5.1e-08 62.0 73 38.4
Gohir.D01G165900 Gossypium hirsutum HOM05D001927 ORTHO05D001972 6.6e-08 61.6 73 39.7
Duzib147G0366 Durio zibethinus HOM05D001927 ORTHO05D001972 1.1e-07 60.8 71 38.0
TPR.G18300 Trifolium pratense HOM05D001927 ORTHO05D001972 1.1e-07 60.8 80 40.0
TPR.G25116 Trifolium pratense HOM05D001927 ORTHO05D001972 1.1e-07 60.8 71 40.8
CiPaw.05G091600 Carya illinoinensis HOM05D001927 ORTHO05D001972 1.5e-07 60.5 75 40.0
Sp7g33070 Schrenkiella parvula HOM05D001927 ORTHO05D001972 1.5e-07 60.5 86 39.5
HanXRQChr14g0442441 Helianthus annuus HOM05D001927 ORTHO05D001972 1.9e-07 60.1 75 40.0
Phvul.002G115300 Phaseolus vulgaris HOM05D001927 ORTHO05D001972 1.9e-07 60.1 70 41.4
Psat4g104080 Pisum sativum HOM05D001927 ORTHO05D001972 1.9e-07 60.1 80 40.0
Potri.004G205100 Populus trichocarpa HOM05D001927 ORTHO05D001972 1.9e-07 60.1 73 41.1
GSVIVG01023891001 Vitis vinifera HOM05D001927 ORTHO05D001972 1.9e-07 60.1 74 39.2
BcaNung00611 Brassica carinata HOM05D001927 ORTHO05D001972 2.5e-07 59.7 83 39.8
Sed0010207 Sechium edule HOM05D001927 ORTHO05D001972 2.5e-07 59.7 83 37.3
Ciclev10025307m.g Citrus clementina HOM05D001927 ORTHO05D001972 3.3e-07 59.3 71 38.0
Psat2g149480 Pisum sativum HOM05D001927 ORTHO05D001972 3.3e-07 59.3 71 43.7
Prupe.8G178100 Prunus persica HOM05D001927 ORTHO05D001972 3.3e-07 59.3 80 37.5
TWI79G0496 Tripterygium wilfordii HOM05D001927 ORTHO05D001972 3.3e-07 59.3 71 38.0
BolC1t00352H Brassica oleracea HOM05D001927 ORTHO05D001972 4.3e-07 58.9 84 39.3
Potri.009G166000 Populus trichocarpa HOM05D001927 ORTHO05D001972 4.3e-07 58.9 73 39.7
PGR142G3843 Punica granatum HOM05D001927 ORTHO05D001972 4.3e-07 58.9 72 38.9
CARHR293500 Cardamine hirsuta HOM05D001927 ORTHO05D001972 5.6e-07 58.5 81 39.5
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 5.6e-07 58.5 79 38.0
TWI31G0016 Tripterygium wilfordii HOM05D001927 ORTHO05D001972 5.6e-07 58.5 73 37.0
C01p03620 Brassica napus HOM05D001927 ORTHO05D001972 7.3e-07 58.2 84 39.3
CANSAT25G0497 Cannabis sativa HOM05D001927 ORTHO05D001972 7.3e-07 58.2 71 39.4
Lsat_1_v5_gn_2_73501 Lactuca sativa HOM05D001927 ORTHO05D001972 7.3e-07 58.2 71 39.4
Nn6g31721 Nelumbo nucifera HOM05D001927 ORTHO05D001972 7.3e-07 58.2 72 37.5
vmacro20528 Vaccinium macrocarpon HOM05D001927 ORTHO05D001972 7.3e-07 58.2 69 40.6
Cpa.g.sc535.2 Carica papaya HOM05D001927 ORTHO05D001972 9.5e-07 57.8 71 39.4
MELO3C013259.2 Cucumis melo HOM05D001927 ORTHO05D001972 9.5e-07 57.8 85 37.6
FvH4_2g16610 Fragaria vesca HOM05D001927 ORTHO05D001972 9.5e-07 57.8 80 37.5
FAN20G1284 Fragaria x ananassa HOM05D001927 ORTHO05D001972 9.5e-07 57.8 80 37.5
FAN27G0140 Fragaria x ananassa HOM05D001927 ORTHO05D001972 9.5e-07 57.8 80 37.5
Potri.005G100200 Populus trichocarpa HOM05D001927 ORTHO05D001972 9.5e-07 57.8 72 38.9
Sabra05G0082800 Salix brachista HOM05D001927 ORTHO05D001972 9.5e-07 57.8 72 38.9
Aa31LG8G14570 Aethionema arabicum HOM05D001927 ORTHO05D001972 1.2e-06 57.4 71 38.0
CsaV3_7G001800 Cucumis sativus L. HOM05D001927 ORTHO05D001972 1.2e-06 57.4 85 37.6
Lalb_Chr09g0321261 Lupinus albus HOM05D001927 ORTHO05D001972 1.2e-06 57.4 74 39.2
Lalb_Chr16g0377241 Lupinus albus HOM05D001927 ORTHO05D001972 1.2e-06 57.4 72 37.5
SGA_v2.0_scaffold58G20316 Striga asiatica HOM05D001927 ORTHO05D001972 1.2e-06 57.4 79 40.5
Atru.chr5.3550 Acer truncatum HOM05D001927 ORTHO05D001972 1.6e-06 57.0 73 37.0
AT2G17200 Arabidopsis thaliana HOM05D001927 ORTHO05D001972 1.6e-06 57.0 80 37.5
MSTRG.2741 Avicennia marina HOM05D001927 ORTHO05D001972 1.6e-06 57.0 69 37.7
Haze_03670 Corylus avellana HOM05D001927 ORTHO05D001972 1.6e-06 57.0 71 38.0
Eucgr.I01516 Eucalyptus grandis HOM05D001927 ORTHO05D001972 1.6e-06 57.0 72 36.1
Glyma.01G159500 Glycine max HOM05D001927 ORTHO05D001972 1.6e-06 57.0 71 38.0
Lj9A406G55 Lonicera japonica HOM05D001927 ORTHO05D001972 1.6e-06 57.0 79 36.7
Lalb_Chr05g0211891 Lupinus albus HOM05D001927 ORTHO05D001972 1.6e-06 57.0 67 40.3
Nitab4.5_0000495g0160 Nicotiana tabacum HOM05D001927 ORTHO05D001972 1.6e-06 57.0 71 39.4
Nitab4.5_0005297g0060 Nicotiana tabacum HOM05D001927 ORTHO05D001972 1.6e-06 57.0 91 36.3
Rhsim08G0027900 Rhododendron simsii HOM05D001927 ORTHO05D001972 1.6e-06 57.0 80 35.0
Sabra04G0138400 Salix brachista HOM05D001927 ORTHO05D001972 1.6e-06 57.0 73 38.4
Sabra09G0129800 Salix brachista HOM05D001927 ORTHO05D001972 1.6e-06 57.0 73 38.4
A06p34140 Brassica napus HOM05D001927 ORTHO05D001972 2.1e-06 56.6 82 37.8
BraA06t26347Z Brassica rapa HOM05D001927 ORTHO05D001972 2.1e-06 56.6 82 37.8
Cfa005350 Carpinus fangiana HOM05D001927 ORTHO05D001972 2.1e-06 56.6 85 35.3
CiPaw.06G116800 Carya illinoinensis HOM05D001927 ORTHO05D001972 2.1e-06 56.6 73 38.4
COL.COLO4_22541 Corchorus olitorius HOM05D001927 ORTHO05D001972 2.1e-06 56.6 62 43.5
HanXRQChr09g0258171 Helianthus annuus HOM05D001927 ORTHO05D001972 2.1e-06 56.6 78 35.9
Prupe.7G181000 Prunus persica HOM05D001927 ORTHO05D001972 2.1e-06 56.6 79 39.2
QL11p055598 Quercus lobata HOM05D001927 ORTHO05D001972 2.1e-06 56.6 69 37.7
QL11p055900 Quercus lobata HOM05D001927 ORTHO05D001972 2.1e-06 56.6 69 37.7
TWI09G0167 Tripterygium wilfordii HOM05D001927 ORTHO05D001972 2.1e-06 56.6 71 36.6
AL3G50060 Arabidopsis lyrata HOM05D001927 ORTHO05D001972 2.8e-06 56.2 80 37.5
ClCG02G003510 Citrullus lanatus HOM05D001927 ORTHO05D001972 2.8e-06 56.2 85 38.8
FAN15G2394 Fragaria x ananassa HOM05D001927 ORTHO05D001972 2.8e-06 56.2 80 36.2
Gohir.A02G177200 Gossypium hirsutum HOM05D001927 ORTHO05D001972 2.8e-06 56.2 71 36.6
Gohir.D03G002700 Gossypium hirsutum HOM05D001927 ORTHO05D001972 2.8e-06 56.2 71 36.6
Gorai.003G002900 Gossypium raimondii HOM05D001927 ORTHO05D001972 2.8e-06 56.2 71 36.6
Hma1.2p1_0032F.1_g018830 Hydrangea macrophylla HOM05D001927 ORTHO05D001972 2.8e-06 56.2 74 36.5
Lj2C496T4 Lonicera japonica HOM05D001927 ORTHO05D001972 2.8e-06 56.2 70 38.6
Lj2g0024598 Lotus japonicus HOM05D001927 ORTHO05D001972 2.8e-06 56.2 80 35.0
Medtr8g073920 Medicago truncatula HOM05D001927 ORTHO05D001972 2.8e-06 56.2 69 42.0
PGR042G0581 Punica granatum HOM05D001927 ORTHO05D001972 2.8e-06 56.2 71 39.4
QL06p052823 Quercus lobata HOM05D001927 ORTHO05D001972 2.8e-06 56.2 71 39.4
QL06p053755 Quercus lobata HOM05D001927 ORTHO05D001972 2.8e-06 56.2 71 39.4
PSO541G2185 Papaver somniferum HOM05D001927 ORTHO05D001972 3.6e-06 55.8 75 38.7
SGA_v2.0_scaffold32G13343 Striga asiatica HOM05D001927 ORTHO05D001972 3.6e-06 55.8 79 38.0
TAR628G0768 Trochodendron aralioides HOM05D001927 ORTHO05D001972 3.6e-06 55.8 70 37.1
unitig_899.g15613 Utricularia gibba HOM05D001927 ORTHO05D001972 3.6e-06 55.8 69 39.1
AUR62011703 Chenopodium quinoa HOM05D001927 ORTHO05D001972 4.7e-06 55.5 69 39.1
AUR62012926 Chenopodium quinoa HOM05D001927 ORTHO05D001972 4.7e-06 55.5 69 39.1
Lj4g0010573 Lotus japonicus HOM05D001927 ORTHO05D001972 4.7e-06 55.5 69 42.0
PSO675G1621 Papaver somniferum HOM05D001927 ORTHO05D001972 4.7e-06 55.5 75 38.7
RcHm_v2.0_Chr2g0097401 Rosa chinensis HOM05D001927 ORTHO05D001972 4.7e-06 55.5 71 35.2
VMungo1215G1850 Vigna mungo HOM05D001927 ORTHO05D001972 4.7e-06 55.5 69 39.1
EL10Ac9g21246 Beta vulgaris HOM05D001927 ORTHO05D001972 6.2e-06 55.1 69 39.1
BcaC01g02943 Brassica carinata HOM05D001927 ORTHO05D001972 6.2e-06 55.1 82 36.6
C03p58050 Brassica napus HOM05D001927 ORTHO05D001972 6.2e-06 55.1 82 36.6
BolC3t18079H Brassica oleracea HOM05D001927 ORTHO05D001972 6.2e-06 55.1 82 36.6
Ca_24968_v3 Cicer arietinum L. HOM05D001927 ORTHO05D001972 6.2e-06 55.1 71 38.0
Dinv08525 Davidia involucrata HOM05D001927 ORTHO05D001972 6.2e-06 55.1 70 35.7
Migut.H02197 Erythranthe guttata HOM05D001927 ORTHO05D001972 6.2e-06 55.1 79 36.7
Medtr5g023830 Medicago truncatula HOM05D001927 ORTHO05D001972 6.2e-06 55.1 72 37.5
Hund00361 Selenicereus undatus HOM05D001927 ORTHO05D001972 6.2e-06 55.1 80 36.2
TAR376G0846 Trochodendron aralioides HOM05D001927 ORTHO05D001972 6.2e-06 55.1 90 32.2
arahy.Tifrunner.gnm1.ann1.IUYP8I Arachis hypogaea HOM05D001927 ORTHO05D001972 8.1e-06 54.7 69 39.1
arahy.Tifrunner.gnm1.ann1.P0RRHQ Arachis hypogaea HOM05D001927 ORTHO05D001972 8.1e-06 54.7 69 39.1
MSTRG.19947 Avicennia marina HOM05D001927 ORTHO05D001972 8.1e-06 54.7 79 38.0
Carub.0003s3114 Capsella rubella HOM05D001927 ORTHO05D001972 8.1e-06 54.7 80 36.2
Cfa007067 Carpinus fangiana HOM05D001927 ORTHO05D001972 8.1e-06 54.7 71 36.6
Ca_22419_v3 Cicer arietinum L. HOM05D001927 ORTHO05D001972 8.1e-06 54.7 80 37.5
FvH4_1g10501 Fragaria vesca HOM05D001927 ORTHO05D001972 8.1e-06 54.7 71 36.6
FAN19G3220 Fragaria x ananassa HOM05D001927 ORTHO05D001972 8.1e-06 54.7 71 36.6
FAN28G1021 Fragaria x ananassa HOM05D001927 ORTHO05D001972 8.1e-06 54.7 71 36.6
MD10G1139400 Malus domestica HOM05D001927 ORTHO05D001972 8.1e-06 54.7 82 37.8
Oeu062475.1 Olea europaea HOM05D001927 ORTHO05D001972 8.1e-06 54.7 71 38.0
RcHm_v2.0_Chr6g0280671 Rosa chinensis HOM05D001927 ORTHO05D001972 8.1e-06 54.7 81 37.0
Solyc03g032160.3 Solanum lycopersicum HOM05D001927 ORTHO05D001972 8.1e-06 54.7 70 37.1


User provided reference genes

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