Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 0.0e+00 1202.6 672 100.0
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 5.7e-305 1050.4 672 86.5
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 1.6e-291 1005.7 672 82.9
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 2.8e-291 1005.0 672 83.0
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 3.6e-291 1004.6 672 83.0
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 3.1e-290 1001.5 673 82.3
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 3.1e-290 1001.5 672 82.1
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 3.1e-290 1001.5 672 82.7
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 4.0e-290 1001.1 672 83.0
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 4.0e-290 1001.1 669 82.5
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 1.3e-288 996.1 670 83.1
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 1.7e-288 995.7 672 82.7
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 4.1e-287 991.1 671 82.4
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 4.1e-287 991.1 671 82.4
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 2.1e-286 988.8 670 81.3
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 1.0e-285 986.5 672 81.0
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 1.3e-285 986.1 672 81.1
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 1.7e-285 985.7 670 80.7
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 2.3e-285 985.3 672 81.0
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 3.9e-285 984.6 672 81.1
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 1.5e-284 982.6 672 81.0
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 1.9e-284 982.2 672 80.7
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 8.1e-283 976.9 672 80.2
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 1.2e-281 973.0 672 80.5
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 3.4e-281 971.5 669 80.3
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 7.6e-281 970.3 672 71.0
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.3e-280 969.5 680 79.6
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 4.9e-280 967.6 672 78.6
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 6.4e-280 967.2 672 80.1
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 8.4e-280 966.8 672 79.9
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 8.4e-280 966.8 672 79.9
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 1.6e-278 962.6 745 67.2
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 2.7e-278 961.8 672 77.4
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 2.7e-278 961.8 688 78.6
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 2.7e-278 961.8 669 72.3
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 4.6e-278 961.1 672 79.9
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 4.6e-278 961.1 672 78.1
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 2.3e-277 958.7 672 79.5
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 6.6e-277 957.2 672 77.8
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 3.6e-275 951.4 672 78.4
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 6.2e-275 950.7 672 79.5
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 6.2e-275 950.7 673 78.6
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.1e-274 949.9 697 77.2
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 5.2e-274 947.6 670 76.6
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 5.2e-274 947.6 672 79.3
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 6.8e-274 947.2 659 70.6
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 8.9e-274 946.8 670 76.1
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 8.9e-274 946.8 672 77.5
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 1.2e-273 946.4 672 78.1
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 5.8e-273 944.1 674 78.5
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 8.4e-272 940.3 670 75.5
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 1.9e-271 939.1 670 75.2
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 7.1e-271 937.2 672 77.2
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 7.1e-271 937.2 673 79.3
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 2.7e-270 935.3 670 76.7
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 4.6e-270 934.5 670 68.7
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 6.0e-270 934.1 673 77.0
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 1.0e-269 933.3 670 74.9
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 6.6e-269 930.6 670 75.2
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 6.6e-269 930.6 671 75.7
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 1.5e-268 929.5 675 75.7
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 3.3e-268 928.3 670 74.5
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 3.3e-268 928.3 670 74.5
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 1.3e-267 926.4 670 75.1
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 1.6e-267 926.0 670 75.2
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 8.1e-267 923.7 670 74.8
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 1.8e-266 922.5 670 75.2
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 4.0e-266 921.4 675 75.4
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 1.5e-265 919.5 670 75.1
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 9.9e-265 916.8 670 73.9
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 1.3e-264 916.4 673 75.3
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 3.8e-264 914.8 673 77.9
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 7.1e-263 910.6 671 76.0
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 1.6e-262 909.4 669 74.9
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 2.1e-259 899.0 673 76.7
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 3.6e-259 898.3 710 73.0
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 4.8e-259 897.9 714 69.7
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 1.5e-257 892.9 672 74.6
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 2.9e-256 888.6 672 72.2
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 7.1e-255 884.0 626 77.2
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 8.1e-251 870.5 689 62.8
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 1.5e-249 866.3 669 74.3
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 7.6e-249 864.0 563 77.1
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 3.5e-246 855.1 672 72.0
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 4.6e-246 854.7 672 73.5
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 5.1e-245 851.3 672 73.1
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 5.7e-244 847.8 633 76.6
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 1.6e-243 846.3 672 71.3
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 2.1e-243 845.9 721 61.4
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 3.7e-243 845.1 676 70.0
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 1.3e-240 836.6 670 71.3
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 2.9e-240 835.5 670 70.3
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 1.9e-239 832.8 557 81.7
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 7.4e-236 820.8 669 72.0
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 8.2e-235 817.4 581 77.6
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 4.1e-234 815.1 671 71.1
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 2.6e-233 812.4 631 74.8
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 6.9e-226 787.7 711 65.0
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 8.8e-221 770.8 672 66.1
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 3.5e-217 758.8 571 67.3
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 1.0e-216 757.3 669 64.3
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 2.4e-170 603.2 424 71.9
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 1.1e-167 594.3 678 54.6
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 7.6e-164 581.6 681 54.0
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 4.9e-163 578.9 397 71.5
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 2.5e-159 566.6 442 69.5
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 2.8e-158 563.1 677 50.8
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 4.9e-155 552.4 444 73.2
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 6.6e-152 542.0 572 56.3
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 1.2e-148 531.2 345 78.3
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 2.2e-139 500.4 431 69.4
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 3.0e-120 436.8 670 45.8
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 1.0e-107 395.2 276 73.9
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 3.8e-107 393.3 376 59.3
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 5.0e-83 313.2 252 82.1
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 1.1e-66 258.8 146 82.2
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 6.2e-65 253.1 157 72.6
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 4.0e-64 250.4 207 59.9
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 8.3e-62 242.7 693 26.7
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.3e-58 230.7 166 65.7
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 9.9e-55 219.2 558 29.6
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 9.2e-53 212.6 239 66.1
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 1.0e-51 209.1 157 67.5
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 4.0e-48 197.2 702 32.3
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 8.7e-43 179.5 250 60.8
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 9.6e-42 176.0 137 69.3
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 1.6e-33 148.7 418 28.5
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 3.6e-33 147.5 102 76.5
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 4.2e-29 134.0 91 79.1
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 7.1e-29 133.3 117 66.7
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 1.0e-27 129.4 90 77.8
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 1.0e-27 129.4 90 77.8
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 4.3e-26 124.0 85 71.8
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 9.6e-26 122.9 81 76.5
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 9.6e-26 122.9 90 74.4
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 2.8e-25 121.3 104 55.8
SalBow6G1464 Salvia bowleyana HOM05D004755 ORTHO05D006137 3.1e-24 117.9 74 73.0
Rhsim12G0078300 Rhododendron simsii HOM05D004755 ORTHO05D006137 7.6e-23 113.2 112 53.6
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 7.1e-21 106.7 69 82.6
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.6e-20 105.5 88 56.8
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 3.9e-19 100.9 89 62.9
SEGI_07035 Sequoiadendron giganteum HOM05D004755 ORTHO05D014145 9.6e-18 96.3 124 72.6
CARHR099950 Cardamine hirsuta HOM05D004755 ORTHO05D006137 3.7e-17 94.4 73 58.9
CsaV3_6G026350 Cucumis sativus L. HOM05D004755 ORTHO05D006137 4.8e-17 94.0 55 67.3
CAN.G572.59 Capsicum annuum HOM05D000541 ORTHO05D000137 1.8e-16 92.0 124 44.4
BcaB01g04782 Brassica carinata HOM05D004755 ORTHO05D039688 7.6e-15 86.7 69 50.7
BcaB01g04780 Brassica carinata HOM05D040276 ORTHO05D039688 1.0e-14 86.3 66 53.0
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 2.7e-12 78.2 271 32.1
CsaV3_2G000030 Cucumis sativus L. HOM05D004755 ORTHO05D006137 5.1e-11 73.9 46 76.1
Cpa.g.sc62.109 Carica papaya HOM05D004755 ORTHO05D006137 5.7e-10 70.5 42 78.6
QL11p042075 Quercus lobata HOM05D004755 ORTHO05D006137 5.7e-10 70.5 49 69.4
CARHR219250 Cardamine hirsuta HOM05D004755 ORTHO05D006137 4.1e-08 64.3 63 49.2
SEGI_26304 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.0e-06 59.7 43 58.1
Gohir.D11G213250 Gossypium hirsutum HOM05D004755 ORTHO05D036105 2.9e-06 58.2 39 71.8
Gorai.007G229200 Gossypium raimondii HOM05D004755 ORTHO05D036105 2.9e-06 58.2 39 71.8
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 3.8e-06 57.8 217 26.3
Gohir.A11G209850 Gossypium hirsutum HOM05D004755 ORTHO05D036105 5.0e-06 57.4 39 71.8
MBI04_g36311_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 5.0e-06 57.4 216 25.0


User provided reference genes

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