Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 2.4e-33 144.8 68 100.0
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 2.0e-32 141.7 68 98.5
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 2.0e-32 141.7 68 98.5
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 2.0e-32 141.7 68 98.5
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 5.9e-32 140.2 69 98.6
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 1.9e-30 135.2 68 95.6
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 3.7e-18 94.4 60 81.7
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 4.8e-18 94.0 60 80.0
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 3.5e-16 87.8 69 71.0
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 7.7e-16 86.7 66 72.7
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 1.7e-15 85.5 49 83.7
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 1.7e-15 85.5 49 83.7
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 5.0e-15 84.0 69 69.6
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 6.5e-15 83.6 62 72.6
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 8.5e-15 83.2 68 67.6
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 8.5e-15 83.2 86 58.1
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.1e-14 82.8 62 71.0
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 1.9e-14 82.0 48 83.3
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 1.9e-14 82.0 48 83.3
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 1.9e-14 82.0 47 83.0
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.5e-14 81.6 63 69.8
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 2.5e-14 81.6 86 57.0
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 3.2e-14 81.3 75 61.3
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 3.2e-14 81.3 48 79.2
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 5.5e-14 80.5 49 77.6
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 5.5e-14 80.5 49 77.6
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 7.2e-14 80.1 65 69.2
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 7.2e-14 80.1 62 72.6
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 1.2e-13 79.3 48 79.2
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 1.6e-13 79.0 46 80.4
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 1.6e-13 79.0 46 80.4
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 2.1e-13 78.6 48 77.1
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 2.1e-13 78.6 78 59.0
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 2.1e-13 78.6 78 59.0
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 2.1e-13 78.6 78 59.0
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 2.1e-13 78.6 47 78.7
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.7e-13 78.2 57 71.9
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 3.6e-13 77.8 53 75.5
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 3.6e-13 77.8 48 77.1
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 4.7e-13 77.4 81 56.8
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.7e-13 77.4 48 79.2
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 4.7e-13 77.4 48 79.2
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 4.7e-13 77.4 46 78.3
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 4.7e-13 77.4 79 55.7
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 4.7e-13 77.4 46 78.3
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 6.1e-13 77.0 48 75.0
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 6.1e-13 77.0 46 78.3
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 6.1e-13 77.0 66 63.6
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 8.0e-13 76.6 85 55.3
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 8.0e-13 76.6 47 76.6
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 8.0e-13 76.6 48 77.1
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 8.0e-13 76.6 48 77.1
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 8.0e-13 76.6 45 82.2
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.0e-12 76.3 56 71.4
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.0e-12 76.3 48 77.1
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 1.0e-12 76.3 48 77.1
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.0e-12 76.3 85 52.9
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.4e-12 75.9 46 78.3
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.4e-12 75.9 48 77.1
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 1.4e-12 75.9 72 62.5
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 1.4e-12 75.9 46 78.3
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.8e-12 75.5 46 78.3
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 1.8e-12 75.5 48 70.8
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.8e-12 75.5 46 76.1
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.8e-12 75.5 46 78.3
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.8e-12 75.5 48 72.9
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 2.3e-12 75.1 77 57.1
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 2.3e-12 75.1 44 81.8
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 2.3e-12 75.1 79 58.2
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 2.3e-12 75.1 79 58.2
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 3.0e-12 74.7 46 76.1
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 3.0e-12 74.7 78 55.1
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 4.0e-12 74.3 44 79.5
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 4.0e-12 74.3 50 74.0
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 4.0e-12 74.3 48 75.0
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 5.2e-12 73.9 44 79.5
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 5.2e-12 73.9 44 79.5
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 5.2e-12 73.9 44 79.5
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 5.2e-12 73.9 44 77.3
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 5.2e-12 73.9 44 77.3
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 6.8e-12 73.6 56 67.9
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 6.8e-12 73.6 56 67.9
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 6.8e-12 73.6 46 76.1
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 6.8e-12 73.6 67 62.7
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 6.8e-12 73.6 75 57.3
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 6.8e-12 73.6 79 57.0
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 6.8e-12 73.6 89 51.7
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 8.8e-12 73.2 44 77.3
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 8.8e-12 73.2 44 77.3
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 8.8e-12 73.2 75 57.3
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 8.8e-12 73.2 79 54.4
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 1.2e-11 72.8 58 65.5
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 1.2e-11 72.8 58 65.5
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 1.2e-11 72.8 58 65.5
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.2e-11 72.8 44 75.0
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 1.2e-11 72.8 70 60.0
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 1.2e-11 72.8 75 56.0
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.2e-11 72.8 79 55.7
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.5e-11 72.4 80 52.5
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.5e-11 72.4 49 69.4
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.5e-11 72.4 49 69.4
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 1.5e-11 72.4 44 79.5
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 1.5e-11 72.4 44 79.5
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.5e-11 72.4 81 54.3
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.0e-11 72.0 41 82.9
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 2.0e-11 72.0 72 61.1
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.0e-11 72.0 74 55.4
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.6e-11 71.6 46 73.9
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 2.6e-11 71.6 78 55.1
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.6e-11 71.6 44 77.3
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.4e-11 71.2 46 71.7
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.4e-11 71.2 71 62.0
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 3.4e-11 71.2 67 61.2
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 3.4e-11 71.2 62 66.1
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 3.4e-11 71.2 61 62.3
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 4.4e-11 70.9 80 52.5
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 4.4e-11 70.9 49 69.4
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 4.4e-11 70.9 44 75.0
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 4.4e-11 70.9 44 75.0
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 4.4e-11 70.9 74 54.1
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 5.7e-11 70.5 83 51.8
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 5.7e-11 70.5 50 74.0
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 5.7e-11 70.5 52 65.4
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 5.7e-11 70.5 44 75.0
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 5.7e-11 70.5 61 65.6
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 5.7e-11 70.5 76 56.6
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 7.5e-11 70.1 58 67.2
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.3e-10 69.3 82 51.2
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.3e-10 69.3 49 67.3
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 1.3e-10 69.3 81 51.9
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 1.3e-10 69.3 41 78.0
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.3e-10 69.3 44 68.2
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.7e-10 68.9 44 70.5
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.2e-10 68.6 65 61.5
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 2.2e-10 68.6 79 53.2
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 2.2e-10 68.6 74 55.4
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 3.7e-10 67.8 76 50.0
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 6.3e-10 67.0 57 61.4
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 8.3e-10 66.6 84 48.8
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-09 66.2 57 61.4
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 1.8e-09 65.5 48 64.6
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 1.8e-09 65.5 47 63.8
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 3.1e-09 64.7 41 75.6
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 4.1e-09 64.3 83 48.2
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 5.4e-09 63.9 81 49.4
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 5.4e-09 63.9 81 49.4
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 5.4e-09 63.9 81 49.4
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 7.0e-09 63.5 44 63.6
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 1.6e-08 62.4 82 50.0
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 2.7e-08 61.6 62 54.8
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 1.0e-07 59.7 76 48.7
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 1.3e-07 59.3 76 51.3
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 2.3e-07 58.5 81 44.4
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 5.0e-07 57.4 87 43.7
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 6.6e-07 57.0 62 53.2
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 8.6e-07 56.6 35 77.1
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.9e-06 55.5 35 74.3
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 2.5e-06 55.1 34 76.5
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 4.2e-06 54.3 46 54.3
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 5.5e-06 53.9 33 72.7
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 7.2e-06 53.5 42 54.8


User provided reference genes

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