Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 1.3e-41 172.6 83 100.0
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 1.2e-31 139.4 120 65.8
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 1.7e-25 119.0 63 93.7
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 5.2e-22 107.5 63 82.5
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 6.7e-22 107.1 63 82.5
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.1e-21 106.3 63 81.0
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.5e-21 105.9 63 81.0
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.5e-21 105.9 63 82.5
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.5e-21 105.9 63 82.5
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.5e-21 105.9 63 82.5
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.5e-21 105.9 63 82.5
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 2.0e-21 105.5 63 82.5
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 4.4e-21 104.4 63 81.0
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 5.7e-21 104.0 63 79.4
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.7e-21 104.0 63 81.0
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 5.7e-21 104.0 63 81.0
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 7.5e-21 103.6 62 79.0
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.7e-21 103.2 63 81.0
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 9.7e-21 103.2 62 79.0
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 1.7e-20 102.4 61 78.7
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 2.2e-20 102.1 63 77.8
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.2e-20 102.1 63 77.8
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 2.2e-20 102.1 63 77.8
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 2.8e-20 101.7 63 79.4
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 3.7e-20 101.3 63 76.2
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 4.8e-20 100.9 63 79.4
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 4.8e-20 100.9 62 77.4
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 4.8e-20 100.9 63 77.8
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 6.3e-20 100.5 62 75.8
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 8.2e-20 100.1 63 79.4
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 8.2e-20 100.1 63 77.8
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 1.1e-19 99.8 63 76.2
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 1.4e-19 99.4 63 76.2
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.8e-19 99.0 63 76.2
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 2.4e-19 98.6 63 76.2
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 2.4e-19 98.6 63 76.2
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 3.1e-19 98.2 63 76.2
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 3.1e-19 98.2 63 73.0
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 4.1e-19 97.8 60 76.7
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 4.1e-19 97.8 63 74.6
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 5.3e-19 97.4 63 77.8
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 7.0e-19 97.1 64 76.6
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 7.0e-19 97.1 64 76.6
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 7.0e-19 97.1 63 71.4
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 9.1e-19 96.7 63 74.6
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 9.1e-19 96.7 66 74.2
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 9.1e-19 96.7 62 72.6
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 9.1e-19 96.7 63 74.6
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.2e-18 96.3 63 73.0
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 1.6e-18 95.9 59 79.7
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 1.6e-18 95.9 59 79.7
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.6e-18 95.9 63 69.8
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.6e-18 95.9 62 72.6
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.6e-18 95.9 60 75.0
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 2.0e-18 95.5 63 71.4
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 2.7e-18 95.1 64 76.6
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 2.7e-18 95.1 64 76.6
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 2.7e-18 95.1 63 74.6
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 2.7e-18 95.1 63 74.6
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 3.5e-18 94.7 64 75.0
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 4.5e-18 94.4 72 69.4
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 5.9e-18 94.0 63 76.2
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 5.9e-18 94.0 63 73.0
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 1.0e-17 93.2 60 73.3
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 1.7e-17 92.4 63 68.3
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 1.7e-17 92.4 62 72.6
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 1.7e-17 92.4 59 72.9
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 1.7e-17 92.4 61 70.5
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 2.2e-17 92.0 64 75.0
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 2.2e-17 92.0 64 75.0
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 2.2e-17 92.0 63 73.0
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 2.9e-17 91.7 63 76.2
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.9e-17 91.7 64 71.9
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 2.9e-17 91.7 59 74.6
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 3.8e-17 91.3 64 71.9
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 3.8e-17 91.3 64 71.9
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 3.8e-17 91.3 61 70.5
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 5.0e-17 90.9 63 73.0
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 6.5e-17 90.5 63 71.4
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 1.1e-16 89.7 62 67.7
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 1.1e-16 89.7 62 67.7
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.5e-16 89.4 63 66.7
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 1.5e-16 89.4 65 73.8
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 1.5e-16 89.4 63 71.4
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 5.5e-16 87.4 63 63.5
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 5.5e-16 87.4 62 66.1
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 1.6e-15 85.9 92 53.3
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 3.6e-15 84.7 64 70.3
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 3.6e-15 84.7 79 57.0
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 3.6e-15 84.7 54 75.9
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.8e-14 82.4 63 65.1
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 5.2e-14 80.9 63 63.5
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 8.8e-14 80.1 52 75.0
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 8.8e-14 80.1 52 75.0
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.2e-13 79.7 63 57.1
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.5e-13 79.3 64 62.5
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 3.4e-13 78.2 64 64.1
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 3.7e-12 74.7 59 62.7
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 2.4e-11 72.0 62 54.8
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 2.4e-11 72.0 63 55.6
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 5.9e-10 67.4 52 61.5
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 8.5e-09 63.5 62 48.4
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 3.2e-08 61.6 58 50.0
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 4.7e-07 57.8 33 87.9
QL04p035096 Quercus lobata HOM05D005846 ORTHO05D007369 6.1e-07 57.4 43 62.8
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.4e-06 56.2 53 54.7
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 5.2e-06 54.3 36 75.0
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 5.2e-06 54.3 36 72.2
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 8.8e-06 53.5 33 75.8
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 8.8e-06 53.5 42 57.1


User provided reference genes

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