Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 1.1e-232 810.4 742 100.0
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 3.2e-99 367.1 241 81.7
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 1.0e-97 362.1 229 84.3
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 6.7e-97 359.4 210 89.5
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.1e-96 358.6 208 89.9
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 1.5e-96 358.2 309 67.3
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 2.6e-96 357.5 208 88.9
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 3.3e-96 357.1 209 89.5
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 3.3e-96 357.1 209 89.5
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 4.4e-96 356.7 240 80.8
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.7e-95 354.8 210 88.6
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 1.7e-95 354.8 208 87.5
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 3.7e-95 353.6 391 62.4
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 4.8e-95 353.2 210 87.6
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 4.8e-95 353.2 301 76.4
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 6.3e-95 352.8 230 83.0
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 8.2e-95 352.4 302 72.8
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 1.1e-94 352.1 210 87.6
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 2.4e-94 350.9 210 87.1
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 5.3e-94 349.7 210 88.1
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 7.0e-94 349.4 208 86.5
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 1.2e-93 348.6 209 88.5
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 1.2e-93 348.6 207 88.4
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 1.2e-93 348.6 282 69.9
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.6e-93 348.2 211 86.3
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 1.6e-93 348.2 210 87.1
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.0e-93 347.8 209 86.1
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 2.6e-93 347.4 211 86.7
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 3.5e-93 347.1 209 86.1
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 4.5e-93 346.7 209 87.6
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 7.7e-93 345.9 210 87.1
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 7.7e-93 345.9 382 73.8
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 1.0e-92 345.5 210 87.6
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 1.0e-92 345.5 242 79.3
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 1.3e-92 345.1 210 86.2
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 1.7e-92 344.7 218 85.3
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 1.7e-92 344.7 209 86.6
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 2.9e-92 344.0 206 87.4
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 3.8e-92 343.6 209 87.1
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 3.8e-92 343.6 209 85.2
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 5.0e-92 343.2 210 86.7
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.0e-92 343.2 210 85.2
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 5.0e-92 343.2 210 85.2
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 5.0e-92 343.2 209 85.2
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 6.5e-92 342.8 209 87.1
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.5e-92 342.8 210 85.2
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.5e-92 342.8 210 85.2
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 6.5e-92 342.8 217 83.9
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.1e-91 342.0 210 85.2
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 1.1e-91 342.0 207 85.5
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 1.5e-91 341.7 208 86.1
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.9e-91 341.3 210 86.2
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 3.2e-91 340.5 218 83.9
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 3.2e-91 340.5 370 68.9
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 4.2e-91 340.1 206 85.4
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 4.2e-91 340.1 210 86.2
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 4.2e-91 340.1 210 86.2
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 4.2e-91 340.1 210 86.2
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 7.2e-91 339.3 211 84.8
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 7.2e-91 339.3 293 74.7
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 7.2e-91 339.3 207 84.1
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 9.4e-91 339.0 210 84.3
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 1.6e-90 338.2 288 74.0
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 1.6e-90 338.2 288 74.0
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.6e-90 338.2 208 84.1
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 2.1e-90 337.8 209 84.2
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 4.7e-90 336.7 209 86.1
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 8.0e-90 335.9 209 82.3
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 5.2e-89 333.2 210 82.9
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 8.8e-89 332.4 210 82.9
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.2e-88 332.0 208 81.7
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 3.4e-88 330.5 209 81.8
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 9.8e-88 328.9 225 77.3
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.3e-87 328.6 209 81.8
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 1.7e-87 328.2 209 80.4
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 1.7e-87 328.2 379 63.6
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 4.8e-87 326.6 209 80.9
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.1e-86 325.5 210 82.9
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 1.8e-86 324.7 202 83.7
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 9.1e-86 322.4 209 79.4
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 4.5e-85 320.1 209 78.9
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 5.0e-84 316.6 196 85.2
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 8.5e-84 315.8 249 71.5
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 5.5e-83 313.2 195 82.6
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 2.1e-82 311.2 243 73.7
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 6.1e-82 309.7 243 67.9
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.0e-81 308.9 209 77.5
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 4.9e-79 300.1 210 75.2
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 4.1e-78 297.0 240 66.2
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.2e-77 295.4 239 66.9
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 7.7e-77 292.7 191 80.6
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 2.5e-75 287.7 179 84.9
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 2.5e-75 287.7 218 72.5
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 7.2e-75 286.2 209 70.3
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 2.1e-74 284.6 200 76.0
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 1.8e-73 281.6 225 71.1
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 5.7e-72 276.6 178 79.8
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 7.8e-69 266.2 198 71.7
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 1.0e-68 265.8 234 60.3
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.9e-68 264.2 189 72.5
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 9.5e-67 259.2 205 65.4
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 6.1e-66 256.5 212 62.7
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 3.4e-64 250.8 188 72.3
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 7.0e-62 243.0 154 85.1
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 1.1e-57 229.2 145 84.8
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 8.9e-57 226.1 171 71.9
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 1.1e-51 209.1 233 55.4
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.1e-42 178.3 156 60.3
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 2.8e-42 177.9 94 97.9
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 4.0e-33 147.5 115 62.6
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.4e-30 139.0 103 77.7
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 5.1e-28 130.6 79 82.3
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 4.0e-25 120.9 76 80.3
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 9.0e-25 119.8 189 38.6
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 1.2e-24 119.4 82 79.3
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 2.6e-24 118.2 63 93.7
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 1.9e-22 112.1 64 89.1
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 4.2e-22 110.9 204 34.8
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.8e-20 105.5 63 79.4
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 6.2e-18 97.1 56 85.7
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 9.0e-17 93.2 89 59.6
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 5.8e-16 90.5 63 73.0
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 7.6e-16 90.1 142 35.2
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 7.6e-16 90.1 142 35.2
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.0e-15 89.7 180 35.0
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.7e-15 89.0 107 48.6
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 4.9e-15 87.4 63 71.4
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 1.2e-13 82.8 52 76.9
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 1.2e-13 82.8 168 33.9
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 7.4e-11 73.6 159 34.0
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 2.6e-08 65.1 57 63.2
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 4.5e-08 64.3 35 85.7
QL04p035096 Quercus lobata HOM05D005846 ORTHO05D007369 1.1e-06 59.7 31 87.1
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 4.2e-06 57.8 36 72.2


User provided reference genes

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