Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 2.6e-234 815.1 423 100.0
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 8.0e-220 766.9 423 92.7
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 1.0e-219 766.5 419 93.8
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 4.4e-218 761.1 419 92.4
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.7e-217 759.2 423 91.0
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.4e-216 756.1 422 90.3
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.8e-216 755.7 419 91.4
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.4e-216 755.4 422 90.3
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.1e-216 755.0 422 90.8
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 1.6e-215 752.7 422 90.8
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 2.0e-215 752.3 422 91.0
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 3.5e-215 751.5 419 91.4
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 4.5e-215 751.1 422 90.3
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 4.5e-215 751.1 422 90.3
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.9e-215 750.7 431 89.1
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 5.9e-215 750.7 423 90.5
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 7.7e-215 750.4 422 89.8
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.0e-214 750.0 419 90.9
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.0e-214 750.0 422 90.5
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.7e-214 749.2 422 89.6
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 3.8e-214 748.0 422 89.1
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.0e-214 747.7 418 90.2
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 8.6e-214 746.9 419 90.0
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.1e-213 746.5 422 89.8
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.5e-213 746.1 423 90.3
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 1.5e-213 746.1 423 89.8
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 1.9e-213 745.7 422 90.3
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 2.5e-213 745.3 419 90.2
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 3.2e-213 745.0 419 90.5
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 4.2e-213 744.6 420 90.0
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 7.2e-213 743.8 420 89.5
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 2.1e-212 742.3 423 88.7
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 2.8e-212 741.9 419 89.7
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 2.8e-212 741.9 423 88.4
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 2.8e-212 741.9 422 89.3
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 3.6e-212 741.5 419 89.7
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 4.7e-212 741.1 419 89.7
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 4.7e-212 741.1 423 89.1
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 8.0e-212 740.3 422 88.9
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 1.0e-211 740.0 420 88.8
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 1.0e-211 740.0 419 89.7
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.0e-211 740.0 422 88.6
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 1.8e-211 739.2 422 88.4
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.8e-211 739.2 471 82.8
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.8e-211 739.2 471 82.8
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 2.3e-211 738.8 422 89.1
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 2.3e-211 738.8 423 88.7
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 5.2e-211 737.6 422 88.9
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 6.8e-211 737.3 422 88.9
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 6.8e-211 737.3 422 88.9
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 1.2e-210 736.5 423 87.9
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 1.2e-210 736.5 420 89.8
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 1.2e-210 736.5 421 87.9
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 1.5e-210 736.1 422 88.2
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.5e-210 736.1 422 88.6
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 1.5e-210 736.1 419 89.3
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 2.0e-210 735.7 419 89.3
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 2.6e-210 735.3 422 88.4
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 2.6e-210 735.3 422 88.6
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 3.4e-210 734.9 423 88.7
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 3.4e-210 734.9 419 89.0
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 4.4e-210 734.6 419 88.8
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 4.4e-210 734.6 422 88.4
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 4.4e-210 734.6 419 89.0
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 4.4e-210 734.6 422 88.6
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 5.7e-210 734.2 419 88.3
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 7.5e-210 733.8 423 88.2
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 7.5e-210 733.8 421 87.6
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 7.5e-210 733.8 421 87.6
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 9.8e-210 733.4 422 88.2
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 9.8e-210 733.4 423 88.2
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 1.3e-209 733.0 419 88.8
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.7e-209 732.6 419 88.1
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 2.2e-209 732.3 421 87.4
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.2e-209 732.3 423 87.9
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 2.2e-209 732.3 422 88.2
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.2e-209 732.3 421 88.1
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 2.8e-209 731.9 420 88.3
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 2.8e-209 731.9 423 88.2
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 3.7e-209 731.5 422 88.2
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 4.9e-209 731.1 423 87.9
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 4.9e-209 731.1 419 88.5
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 8.3e-209 730.3 423 87.5
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 8.3e-209 730.3 422 88.4
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 1.4e-208 729.6 422 87.9
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 1.8e-208 729.2 422 87.9
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 1.8e-208 729.2 422 87.9
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 2.4e-208 728.8 420 87.9
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.4e-208 728.8 438 86.5
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 3.1e-208 728.4 422 88.2
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 3.1e-208 728.4 420 88.1
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 3.1e-208 728.4 419 88.3
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 4.1e-208 728.0 422 87.7
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 7.0e-208 727.2 423 87.7
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 9.2e-208 726.9 419 87.6
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 9.2e-208 726.9 423 88.2
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.0e-207 725.7 420 88.3
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 3.5e-207 724.9 424 88.0
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.5e-207 724.9 438 85.6
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 7.8e-207 723.8 419 87.1
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.0e-206 723.4 438 84.2
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.3e-206 723.0 423 86.3
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 1.7e-206 722.6 419 88.3
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 3.8e-206 721.5 419 87.1
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 5.0e-206 721.1 419 87.1
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 6.6e-206 720.7 423 86.5
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 6.6e-206 720.7 423 86.5
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 8.6e-206 720.3 432 86.6
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 1.1e-205 719.9 453 82.1
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 3.3e-205 718.4 423 86.3
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 1.2e-204 716.5 431 84.5
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.1e-204 715.7 452 83.2
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 2.3e-203 712.2 423 85.6
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.2e-202 709.9 425 85.6
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 3.4e-202 708.4 423 86.1
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 3.4e-202 708.4 423 86.5
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.1e-196 689.1 423 84.6
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 4.7e-196 688.0 424 82.3
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 6.2e-196 687.6 388 89.7
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 3.1e-195 685.3 502 73.9
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 8.9e-195 683.7 473 78.4
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 4.1e-192 674.9 375 90.7
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 4.6e-191 671.4 421 81.9
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 4.6e-191 671.4 412 82.8
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 6.6e-190 667.5 378 88.6
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.6e-188 662.9 389 86.6
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.6e-188 662.9 416 83.9
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 1.1e-184 650.2 373 86.6
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 4.1e-184 648.3 363 90.1
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 8.6e-182 640.6 405 80.0
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 1.1e-181 640.2 398 80.4
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 6.4e-177 624.4 423 78.0
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 8.7e-174 614.0 416 74.8
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.8e-169 598.6 408 77.5
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 4.2e-168 595.1 334 89.5
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 9.3e-168 594.0 400 73.5
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.3e-156 557.0 309 91.6
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 1.9e-149 533.1 422 64.9
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.3e-148 530.4 396 66.9
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 8.4e-145 517.7 398 66.1
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 5.7e-141 505.0 458 64.0
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 1.5e-138 496.9 280 90.4
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.1e-136 490.7 284 85.9
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 4.2e-136 488.8 392 70.4
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 5.1e-126 455.3 260 88.5
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.4e-118 430.6 243 91.4
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 4.5e-114 415.6 236 87.3
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.5e-109 400.6 225 87.6
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 4.4e-101 372.5 244 77.0
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 2.3e-97 360.1 205 88.3
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 6.1e-87 325.5 288 62.8
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 4.3e-72 276.2 293 50.9
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 6.8e-70 268.9 207 68.1
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 4.6e-66 256.1 147 85.7
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 2.2e-60 237.3 189 62.4
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 9.0e-54 215.3 134 77.6
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 2.1e-50 204.1 181 66.3
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 1.1e-46 191.8 119 76.5
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 1.4e-46 191.4 114 91.2
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 4.2e-43 179.9 150 67.3
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 4.3e-40 169.9 109 79.8
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 9.9e-37 158.7 288 35.8
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 1.3e-36 158.3 157 61.1
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 1.7e-36 157.9 157 60.5
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 9.6e-32 142.1 82 87.8
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 2.6e-29 134.0 179 41.9
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 9.3e-27 125.6 149 52.3
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.1e-24 118.6 69 84.1
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 3.3e-16 90.5 100 55.0
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 8.2e-15 85.9 50 94.0
Haze_26311 Corylus avellana HOM05D002944 ORTHO05D003377 1.8e-14 84.7 383 29.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 5.3e-14 83.2 53 83.0
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 1.4e-11 75.1 40 95.0
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 3.6e-10 70.5 113 38.9
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 3.6e-10 70.5 37 89.2
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 7.9e-10 69.3 111 38.7
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 8.8e-09 65.9 60 53.3
Cre05.g241850 Chlamydomonas reinhardtii HOM05D002061 ORTHO05D002849 2.4e-06 57.8 369 23.6
HanXRQChr15g0475161 Helianthus annuus HOM05D004007 ORTHO05D222506 4.1e-06 57.0 34 79.4


User provided reference genes

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