Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.715 Acer truncatum HOM05D006162 ORTHO05D007627 4.2e-130 468.0 231 100.0
Ciclev10025253m.g Citrus clementina HOM05D006162 ORTHO05D007627 2.4e-69 266.2 230 61.7
Dinv05774 Davidia involucrata HOM05D006162 ORTHO05D007627 7.3e-58 228.0 233 54.5
Thecc.07G145700 Theobroma cacao HOM05D006162 ORTHO05D007627 7.3e-58 228.0 230 54.3
Duzib187G0444 Durio zibethinus HOM05D006162 ORTHO05D007627 2.8e-57 226.1 230 53.5
QL06p031367 Quercus lobata HOM05D006162 ORTHO05D007627 2.8e-57 226.1 226 53.1
Cfa002788 Carpinus fangiana HOM05D006162 ORTHO05D007627 1.4e-56 223.8 228 53.1
TAR625G0476 Trochodendron aralioides HOM05D006162 ORTHO05D007627 1.4e-53 213.8 235 49.4
Gohir.A13G151700 Gossypium hirsutum HOM05D006162 ORTHO05D007627 2.1e-52 209.9 227 52.9
Gohir.D13G156100 Gossypium hirsutum HOM05D006162 ORTHO05D007627 2.1e-52 209.9 227 52.9
Gorai.013G176700 Gossypium raimondii HOM05D006162 ORTHO05D007627 1.3e-51 207.2 227 52.4
Haze_25085 Corylus avellana HOM05D006162 ORTHO05D007627 3.9e-51 205.7 240 48.3
RcHm_v2.0_Chr2g0118111 Rosa chinensis HOM05D006162 ORTHO05D007627 1.1e-48 197.6 225 49.8
CSS0015273 Camellia sinensis var. sinensis HOM05D006162 ORTHO05D007627 3.1e-48 196.1 234 46.2
TWI79G1464 Tripterygium wilfordii HOM05D006162 ORTHO05D007627 2.0e-47 193.4 232 48.3
Manes.12G145600 Manihot esculenta HOM05D006162 ORTHO05D007627 2.6e-47 193.0 228 47.8
GSVIVG01022265001 Vitis vinifera HOM05D006162 ORTHO05D007627 4.4e-47 192.2 237 46.8
Cpa.g.sc72.51 Carica papaya HOM05D006162 ORTHO05D000563 3.5e-44 182.6 209 50.7
Prupe.6G165900 Prunus persica HOM05D006162 ORTHO05D007627 3.9e-43 179.1 225 48.9
Potri.007G077100 Populus trichocarpa HOM05D006162 ORTHO05D007627 1.1e-42 177.6 228 46.9
Sed0011946 Sechium edule HOM05D006162 ORTHO05D007627 1.1e-42 177.6 226 44.7
MD01G1015800 Malus domestica HOM05D006162 ORTHO05D007627 1.5e-42 177.2 226 46.5
Aqoxy6G00404 Aquilegia oxysepala HOM05D006162 ORTHO05D007627 2.5e-42 176.4 236 44.9
Cc07_g16680 Coffea canephora HOM05D006162 ORTHO05D007627 2.5e-42 176.4 233 45.5
Glyma.05G186500 Glycine max HOM05D006162 ORTHO05D007627 2.5e-42 176.4 232 42.7
MELO3C020973.2 Cucumis melo HOM05D006162 ORTHO05D007627 3.3e-42 176.0 226 45.1
Rhsim08G0004700 Rhododendron simsii HOM05D006162 ORTHO05D007627 9.6e-42 174.5 230 46.1
COL.COLO4_17421 Corchorus olitorius HOM05D000398 ORTHO05D007627 2.1e-41 173.3 220 45.5
FAN28G1724 Fragaria x ananassa HOM05D006162 ORTHO05D007627 4.7e-41 172.2 225 44.4
Glyma.08G145100 Glycine max HOM05D006162 ORTHO05D007627 1.4e-40 170.6 232 41.8
FAN23G1837 Fragaria x ananassa HOM05D006162 ORTHO05D007627 2.4e-40 169.9 225 43.1
Peaxi162Scf00025g03226 Petunia axillaris HOM05D006162 ORTHO05D007627 2.4e-40 169.9 232 44.8
ClCG02G000880 Citrullus lanatus HOM05D006162 ORTHO05D007627 9.0e-40 167.9 226 43.4
vmacro18055 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 2.0e-39 166.8 230 45.7
Phvul.002G267600 Phaseolus vulgaris HOM05D006162 ORTHO05D007627 2.6e-39 166.4 240 42.5
FAN19G1907 Fragaria x ananassa HOM05D006162 ORTHO05D007627 7.6e-39 164.9 225 43.1
Nitab4.5_0000184g0020 Nicotiana tabacum HOM05D006162 ORTHO05D007627 9.9e-39 164.5 231 43.3
VMungo0251G2144 Vigna mungo HOM05D006162 ORTHO05D007627 2.2e-38 163.3 240 42.5
CsaV3_2G017830 Cucumis sativus L. HOM05D006162 ORTHO05D007627 3.8e-38 162.5 261 39.1
Nn5g27123 Nelumbo nucifera HOM05D006162 ORTHO05D007627 4.9e-38 162.2 211 43.6
Eucgr.H04890 Eucalyptus grandis HOM05D006162 ORTHO05D007627 3.2e-37 159.5 227 43.6
Sc16g0004090 Simmondsia chinensis HOM05D006162 ORTHO05D007627 7.8e-36 154.8 227 43.2
Nitab4.5_0007426g0010 Nicotiana tabacum HOM05D006162 ORTHO05D007627 1.3e-35 154.1 231 41.6
PGSC0003DMG400019694 Solanum tuberosum HOM05D006162 ORTHO05D007627 3.9e-35 152.5 230 40.0
MBI17_g27203_MAGBIO Magnolia biondii HOM05D006162 ORTHO05D007627 5.1e-35 152.1 246 39.8
Nn5g27122 Nelumbo nucifera HOM05D006162 ORTHO05D007627 5.6e-34 148.7 204 42.6
Solyc04g051410.4 Solanum lycopersicum HOM05D006162 ORTHO05D007627 7.3e-34 148.3 230 39.6
TPR.G2184 Trifolium pratense HOM05D006162 ORTHO05D007627 1.3e-33 147.5 233 40.3
Ca_17673_v3 Cicer arietinum L. HOM05D006162 ORTHO05D007627 2.1e-33 146.7 237 39.7
arahy.Tifrunner.gnm1.ann1.2PK97N Arachis hypogaea HOM05D006162 ORTHO05D007627 2.8e-33 146.4 231 38.1
CiPaw.03G131500 Carya illinoinensis HOM05D006162 ORTHO05D007627 1.4e-32 144.1 207 43.0
Sopen04g022820 Solanum pennellii HOM05D006162 ORTHO05D007627 1.4e-32 144.1 230 39.1
Lj4g0017392 Lotus japonicus HOM05D006162 ORTHO05D007627 2.4e-32 143.3 233 40.8
FAN26G3317 Fragaria x ananassa HOM05D006162 ORTHO05D007627 3.1e-32 142.9 211 41.7
Lalb_Chr13g0296301 Lupinus albus HOM05D006162 ORTHO05D007627 3.1e-32 142.9 218 40.4
Medtr8g092350 Medicago truncatula HOM05D006162 ORTHO05D007627 3.1e-32 142.9 230 39.6
CANSAT01G0187 Cannabis sativa HOM05D006162 ORTHO05D007627 4.0e-32 142.5 207 42.0
CAN.G452.13 Capsicum annuum HOM05D006162 ORTHO05D007627 4.0e-32 142.5 229 38.4
Oeu001984.1 Olea europaea HOM05D006162 ORTHO05D007627 5.3e-32 142.1 233 41.6
Hund19624 Selenicereus undatus HOM05D006162 ORTHO05D007627 9.0e-32 141.4 226 39.8
Psat7g049400 Pisum sativum HOM05D006162 ORTHO05D007627 2.6e-31 139.8 235 41.7
THA.LOC104824832 Tarenaya hassleriana HOM05D006162 ORTHO05D007627 7.6e-31 138.3 227 39.2
AUR62017952 Chenopodium quinoa HOM05D006162 ORTHO05D007627 1.3e-30 137.5 224 39.3
AUR62044023 Chenopodium quinoa HOM05D006162 ORTHO05D007627 1.3e-30 137.5 224 39.3
AUR62003642 Chenopodium quinoa HOM05D006162 ORTHO05D007627 2.2e-30 136.7 226 38.9
HanXRQChr14g0446061 Helianthus annuus HOM05D006162 ORTHO05D007627 2.9e-30 136.3 227 37.9
ECA238G0813 Erigeron canadensis HOM05D006162 ORTHO05D007627 2.4e-29 133.3 226 36.3
EL10Ac6g15232 Beta vulgaris HOM05D006162 ORTHO05D007627 5.4e-29 132.1 228 39.0
SGA_v2.0_scaffold2G01268 Striga asiatica HOM05D006162 ORTHO05D007627 5.4e-29 132.1 227 38.8
arahy.Tifrunner.gnm1.ann1.QP02N2 Arachis hypogaea HOM05D006162 ORTHO05D007627 1.2e-28 131.0 231 37.2
CDE08G0720 Ceratophyllum demersum HOM05D006162 ORTHO05D007627 1.2e-28 131.0 233 33.9
Migut.H02454 Erythranthe guttata HOM05D006162 ORTHO05D007627 4.6e-28 129.0 232 39.2
Ah.02g123760 Amaranthus hybridus HOM05D006162 ORTHO05D007627 6.7e-27 125.2 229 39.3
PSO675G6781 Papaver somniferum HOM05D006162 ORTHO05D007627 4.3e-26 122.5 403 28.5
ATR0584G096 Amborella trichopoda HOM05D006162 ORTHO05D007627 2.1e-25 120.2 233 37.3
PGR102G2965 Punica granatum HOM05D006162 ORTHO05D007627 2.1e-25 120.2 232 34.9
Aa31LG6G15910 Aethionema arabicum HOM05D006162 ORTHO05D007627 2.8e-25 119.8 226 38.5
PSO541G4150 Papaver somniferum HOM05D006162 ORTHO05D007627 6.2e-25 118.6 401 28.4
Lsat_1_v5_gn_2_67341 Lactuca sativa HOM05D006162 ORTHO05D007627 1.1e-24 117.9 237 34.2
BolC3t20037H Brassica oleracea HOM05D006162 ORTHO05D007627 2.4e-24 116.7 225 37.8
Carub.0007s0129 Capsella rubella HOM05D006162 ORTHO05D007627 4.0e-24 115.9 224 36.6
BcaC01g00286 Brassica carinata HOM05D006162 ORTHO05D007627 1.5e-23 114.0 224 37.1
C03p77810 Brassica napus HOM05D006162 ORTHO05D007627 1.5e-23 114.0 224 37.1
Thhalv10025021m.g Eutrema salsugineum HOM05D006162 ORTHO05D007627 1.5e-23 114.0 226 36.3
BcaB03g12289 Brassica carinata HOM05D006162 ORTHO05D007627 2.0e-23 113.6 224 36.6
BraA08t34318Z Brassica rapa HOM05D006162 ORTHO05D007627 5.8e-23 112.1 224 36.2
Sp7g36490 Schrenkiella parvula HOM05D006162 ORTHO05D007627 2.9e-22 109.8 226 34.5
A08p23610 Brassica napus HOM05D006162 ORTHO05D007627 4.9e-22 109.0 224 35.3
unitig_899.g14618 Utricularia gibba HOM05D006162 ORTHO05D007627 1.9e-21 107.1 225 36.4
AL7G11390 Arabidopsis lyrata HOM05D006162 ORTHO05D007627 2.5e-21 106.7 224 35.3
HPP92_009257 Vanilla planifolia HOM05D006162 ORTHO05D007627 5.5e-21 105.5 225 33.8
AT4G39370 Arabidopsis thaliana HOM05D006162 ORTHO05D007627 9.3e-21 104.8 224 35.7
Sabra07G0065000 Salix brachista HOM05D006162 ORTHO05D007627 2.7e-20 103.2 93 60.2
FvH4_1g23260 Fragaria vesca HOM05D006162 ORTHO05D007627 3.5e-20 102.8 108 48.1
Zm00001eb082910 Zea mays HOM05D006162 ORTHO05D007627 3.9e-19 99.4 226 30.5
Lj4A860G2 Lonicera japonica HOM05D006162 ORTHO05D007627 1.1e-18 97.8 91 52.7
SEGI_22619 Sequoiadendron giganteum HOM05D006162 ORTHO05D007627 1.6e-17 94.0 342 26.0
Hma1.2p1_0220F.1_g092950 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 4.0e-16 89.4 74 58.1
Nitab4.5_0005242g0040 Nicotiana tabacum HOM05D006162 ORTHO05D007627 2.6e-15 86.7 82 52.4
DCAR_011464 Daucus carota HOM05D006162 ORTHO05D007627 1.0e-14 84.7 77 59.7
Pp3c18_18540 Physcomitrium patens HOM05D006162 ORTHO05D007627 8.7e-11 71.6 348 24.4
SEGI_05196 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 2.4e-08 63.5 80 41.2
SMO340G0295 Selaginella moellendorffii HOM05D006162 ORTHO05D007627 6.9e-08 62.0 72 47.2
Manes.15G054100 Manihot esculenta HOM05D003912 ORTHO05D004409 9.0e-08 61.6 77 41.6
Sabra17G0047100 Salix brachista HOM05D003912 ORTHO05D004409 9.0e-08 61.6 78 39.7
Duzib212G0883 Durio zibethinus HOM05D003912 ORTHO05D004409 1.5e-07 60.8 79 41.8
MD04G1009400 Malus domestica HOM05D003912 ORTHO05D004409 1.5e-07 60.8 82 41.5
THA.LOC104801027 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 1.5e-07 60.8 77 41.6
Pp3c19_20640 Physcomitrium patens HOM05D003912 ORTHO05D004409 2.6e-07 60.1 73 45.2
Nitab4.5_0007416g0010 Nicotiana tabacum HOM05D003912 ORTHO05D004409 3.4e-07 59.7 85 38.8
Prupe.1G008700 Prunus persica HOM05D003912 ORTHO05D004409 4.5e-07 59.3 82 40.2
Medtr3g083600 Medicago truncatula HOM05D003912 ORTHO05D004409 5.9e-07 58.9 76 40.8
BcaB03g13468 Brassica carinata HOM05D003912 ORTHO05D004409 7.7e-07 58.5 75 38.7
Psat5g101840 Pisum sativum HOM05D003912 ORTHO05D004409 7.7e-07 58.5 78 39.7
Potri.017G055600 Populus trichocarpa HOM05D003912 ORTHO05D004409 1.0e-06 58.2 79 38.0
QL06p025007 Quercus lobata HOM05D003912 ORTHO05D004409 1.0e-06 58.2 77 39.0
Haze_11613 Corylus avellana HOM05D003912 ORTHO05D004409 1.3e-06 57.8 77 39.0
CAN.G1635.11 Capsicum annuum HOM05D003912 ORTHO05D004409 1.7e-06 57.4 77 41.6
Nitab4.5_0002260g0180 Nicotiana tabacum HOM05D003912 ORTHO05D004409 1.7e-06 57.4 76 40.8
Nitab4.5_0006297g0020 Nicotiana tabacum HOM05D003912 ORTHO05D004409 1.7e-06 57.4 77 41.6
Pp3c22_11200 Physcomitrium patens HOM05D003912 ORTHO05D004409 1.7e-06 57.4 75 41.3
Sp1g03710 Schrenkiella parvula HOM05D003912 ORTHO05D004409 1.7e-06 57.4 75 42.7
TPR.G19333 Trifolium pratense HOM05D003912 ORTHO05D004409 1.7e-06 57.4 76 40.8
arahy.Tifrunner.gnm1.ann1.1SB5R1 Arachis hypogaea HOM05D003912 ORTHO05D004409 2.2e-06 57.0 77 41.6
Carub.0004s1415 Capsella rubella HOM05D003912 ORTHO05D004409 2.2e-06 57.0 78 43.6
Lj6C552G3 Lonicera japonica HOM05D003912 ORTHO05D004409 2.2e-06 57.0 77 39.0
Lj1g0016947 Lotus japonicus HOM05D006162 ORTHO05D007627 2.2e-06 57.0 51 56.9
Lj1g0027635 Lotus japonicus HOM05D006162 ORTHO05D007627 2.2e-06 57.0 51 56.9
Oeu049032.1 Olea europaea HOM05D003912 ORTHO05D004409 2.2e-06 57.0 74 43.2
ATR0609G080 Amborella trichopoda HOM05D003912 ORTHO05D004409 2.9e-06 56.6 80 41.2
AL1G14580 Arabidopsis lyrata HOM05D003912 ORTHO05D004409 2.9e-06 56.6 74 41.9
arahy.Tifrunner.gnm1.ann1.2BAE9R Arachis hypogaea HOM05D003912 ORTHO05D004409 2.9e-06 56.6 77 41.6
TWI09G1517 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 2.9e-06 56.6 79 39.2
AT1G04860 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 3.8e-06 56.2 74 41.9
Thhalv10006716m.g Eutrema salsugineum HOM05D003912 ORTHO05D004409 3.8e-06 56.2 75 41.3
FAN12G1567 Fragaria x ananassa HOM05D003912 ORTHO05D004409 3.8e-06 56.2 76 39.5
Gohir.A09G188000 Gossypium hirsutum HOM05D001091 ORTHO05D001020 3.8e-06 56.2 80 35.0
MD13G1284700 Malus domestica HOM05D003912 ORTHO05D004409 3.8e-06 56.2 77 39.0
Os09g0505100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 3.8e-06 56.2 78 37.2
PGSC0003DMG400031289 Solanum tuberosum HOM05D003912 ORTHO05D004409 3.8e-06 56.2 77 40.3
CARHR004250 Cardamine hirsuta HOM05D003912 ORTHO05D004409 5.0e-06 55.8 74 41.9
Ca_16382_v3 Cicer arietinum L. HOM05D003912 ORTHO05D004409 5.0e-06 55.8 76 39.5
Gohir.D12G242700 Gossypium hirsutum HOM05D001091 ORTHO05D001020 5.0e-06 55.8 77 36.4
Gorai.008G259900 Gossypium raimondii HOM05D001091 ORTHO05D001020 5.0e-06 55.8 77 36.4
TWI73G0783 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 5.0e-06 55.8 79 38.0
AT2G32780 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 6.5e-06 55.5 78 39.7
Migut.G00711 Erythranthe guttata HOM05D003912 ORTHO05D004409 6.5e-06 55.5 77 44.2
FvH4_4g16490 Fragaria vesca HOM05D003912 ORTHO05D004409 6.5e-06 55.5 76 40.8
Glyma.18G000500 Glycine max HOM05D003912 ORTHO05D004409 6.5e-06 55.5 84 38.1
Gohir.A12G241400 Gossypium hirsutum HOM05D001091 ORTHO05D001020 6.5e-06 55.5 77 36.4
Oeu055784.1 Olea europaea HOM05D003912 ORTHO05D004409 6.5e-06 55.5 74 37.8
Peaxi162Scf00047g00430 Petunia axillaris HOM05D003912 ORTHO05D004409 6.5e-06 55.5 77 40.3
Sed0004228 Sechium edule HOM05D001091 ORTHO05D001020 6.5e-06 55.5 77 36.4
Solyc09g091930.3 Solanum lycopersicum HOM05D003912 ORTHO05D004409 6.5e-06 55.5 77 37.7
Sopen09g034830 Solanum pennellii HOM05D003912 ORTHO05D004409 6.5e-06 55.5 77 37.7
PGSC0003DMG401015759 Solanum tuberosum HOM05D003912 ORTHO05D004409 6.5e-06 55.5 75 41.3
Thecc.05G108000 Theobroma cacao HOM05D001091 ORTHO05D001020 6.5e-06 55.5 105 31.4
HPP92_013626 Vanilla planifolia HOM05D003912 ORTHO05D004409 6.5e-06 55.5 75 41.3
AUR62020827 Chenopodium quinoa HOM05D003912 ORTHO05D004409 8.5e-06 55.1 77 39.0
ClCG01G001440 Citrullus lanatus HOM05D001091 ORTHO05D001020 8.5e-06 55.1 77 36.4
Ciclev10004226m.g Citrus clementina HOM05D003912 ORTHO05D004409 8.5e-06 55.1 77 39.0
FAN07G1879 Fragaria x ananassa HOM05D003912 ORTHO05D004409 8.5e-06 55.1 76 40.8
Glyma.11G256600 Glycine max HOM05D003912 ORTHO05D004409 8.5e-06 55.1 77 39.0
Gohir.D09G129200 Gossypium hirsutum HOM05D001091 ORTHO05D001020 8.5e-06 55.1 105 31.4
Manes.03G147300 Manihot esculenta HOM05D003912 ORTHO05D004409 8.5e-06 55.1 75 38.7
Mapoly0123s0038 Marchantia polymorpha HOM05D003912 ORTHO05D004409 8.5e-06 55.1 78 43.6
Nn1g07894 Nelumbo nucifera HOM05D003912 ORTHO05D004409 8.5e-06 55.1 73 39.7
Sopen05g032180 Solanum pennellii HOM05D003912 ORTHO05D004409 8.5e-06 55.1 75 41.3
TWI09G0574 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 8.5e-06 55.1 79 38.0


User provided reference genes

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