Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.714 Acer truncatum HOM05D006162 ORTHO05D007627 2.3e-218 761.9 374 100.0
Ciclev10025253m.g Citrus clementina HOM05D006162 ORTHO05D007627 2.0e-145 519.6 359 73.0
COL.COLO4_17421 Corchorus olitorius HOM05D000398 ORTHO05D007627 1.8e-130 469.9 365 65.5
Thecc.07G145700 Theobroma cacao HOM05D006162 ORTHO05D007627 2.8e-128 462.6 365 65.2
QL06p031367 Quercus lobata HOM05D006162 ORTHO05D007627 1.1e-127 460.7 365 66.0
Haze_25085 Corylus avellana HOM05D006162 ORTHO05D007627 1.3e-125 453.8 367 64.9
Cfa002788 Carpinus fangiana HOM05D006162 ORTHO05D007627 3.8e-125 452.2 365 65.2
Manes.12G145600 Manihot esculenta HOM05D006162 ORTHO05D007627 1.2e-123 447.2 355 63.7
Cpa.g.sc72.50 Carica papaya HOM05D006162 ORTHO05D007627 8.9e-122 441.0 365 61.6
Prupe.6G165900 Prunus persica HOM05D006162 ORTHO05D007627 9.8e-121 437.6 362 63.0
Gohir.D13G156100 Gossypium hirsutum HOM05D006162 ORTHO05D007627 3.7e-120 435.6 362 61.0
Gorai.013G176700 Gossypium raimondii HOM05D006162 ORTHO05D007627 3.7e-120 435.6 362 61.0
CiPaw.03G131500 Carya illinoinensis HOM05D006162 ORTHO05D007627 1.6e-118 430.3 365 63.6
Gohir.A13G151700 Gossypium hirsutum HOM05D006162 ORTHO05D007627 6.0e-118 428.3 362 60.2
Dinv05774 Davidia involucrata HOM05D006162 ORTHO05D007627 1.4e-114 417.2 362 58.3
TWI79G1464 Tripterygium wilfordii HOM05D006162 ORTHO05D007627 1.8e-114 416.8 344 62.5
FvH4_1g23260 Fragaria vesca HOM05D006162 ORTHO05D007627 5.8e-113 411.8 362 56.9
RcHm_v2.0_Chr2g0118111 Rosa chinensis HOM05D006162 ORTHO05D007627 5.8e-113 411.8 374 57.8
MD01G1015800 Malus domestica HOM05D006162 ORTHO05D007627 1.1e-111 407.5 365 59.2
FAN23G1837 Fragaria x ananassa HOM05D006162 ORTHO05D007627 2.4e-111 406.4 362 57.2
TAR625G0476 Trochodendron aralioides HOM05D006162 ORTHO05D007627 1.6e-110 403.7 365 57.3
FAN28G1724 Fragaria x ananassa HOM05D006162 ORTHO05D007627 4.6e-110 402.1 362 56.4
CANSAT01G0187 Cannabis sativa HOM05D006162 ORTHO05D007627 1.1e-106 391.0 362 55.5
Nn5g27123 Nelumbo nucifera HOM05D006162 ORTHO05D007627 1.1e-106 391.0 361 56.2
Potri.007G077100 Populus trichocarpa HOM05D006162 ORTHO05D007627 1.4e-106 390.6 344 60.5
Eucgr.H04890 Eucalyptus grandis HOM05D006162 ORTHO05D007627 1.5e-105 387.1 339 59.6
THA.LOC104824832 Tarenaya hassleriana HOM05D006162 ORTHO05D007627 1.3e-104 384.0 364 55.5
GSVIVG01022265001 Vitis vinifera HOM05D006162 ORTHO05D007627 2.4e-103 379.8 306 63.1
Glyma.08G145100 Glycine max HOM05D006162 ORTHO05D007627 2.5e-100 369.8 328 59.8
Sabra07G0065000 Salix brachista HOM05D006162 ORTHO05D007627 2.5e-100 369.8 357 56.6
VMungo0251G2144 Vigna mungo HOM05D006162 ORTHO05D007627 4.3e-100 369.0 327 58.7
Phvul.002G267600 Phaseolus vulgaris HOM05D006162 ORTHO05D007627 2.4e-98 363.2 327 59.0
Aa31LG6G15910 Aethionema arabicum HOM05D006162 ORTHO05D007627 9.9e-97 357.8 344 53.5
Lsat_1_v5_gn_2_67341 Lactuca sativa HOM05D006162 ORTHO05D007627 3.8e-96 355.9 369 52.0
Rhsim08G0004700 Rhododendron simsii HOM05D006162 ORTHO05D007627 3.2e-95 352.8 429 46.9
Glyma.05G186500 Glycine max HOM05D006162 ORTHO05D007627 1.2e-94 350.9 337 56.7
CsaV3_2G017830 Cucumis sativus L. HOM05D006162 ORTHO05D007627 1.0e-93 347.8 323 57.9
Sp7g36490 Schrenkiella parvula HOM05D006162 ORTHO05D007627 1.3e-93 347.4 366 53.3
Cc07_g16680 Coffea canephora HOM05D006162 ORTHO05D007627 1.7e-93 347.1 369 52.0
Nitab4.5_0000184g0020 Nicotiana tabacum HOM05D006162 ORTHO05D007627 6.6e-93 345.1 362 51.1
Lalb_Chr13g0296311 Lupinus albus HOM05D006162 ORTHO05D007627 8.7e-93 344.7 343 53.4
AT4G39370 Arabidopsis thaliana HOM05D006162 ORTHO05D007627 3.3e-92 342.8 367 52.0
ClCG02G000880 Citrullus lanatus HOM05D006162 ORTHO05D007627 4.3e-92 342.4 361 52.4
arahy.Tifrunner.gnm1.ann1.2PK97N Arachis hypogaea HOM05D006162 ORTHO05D007627 7.3e-92 341.7 287 61.3
Duzib187G0444 Durio zibethinus HOM05D006162 ORTHO05D007627 1.1e-90 337.8 227 70.5
AL7G11390 Arabidopsis lyrata HOM05D006162 ORTHO05D007627 1.8e-90 337.0 363 51.5
Hund19624 Selenicereus undatus HOM05D006162 ORTHO05D007627 2.4e-90 336.7 364 48.9
arahy.Tifrunner.gnm1.ann1.QP02N2 Arachis hypogaea HOM05D006162 ORTHO05D007627 3.1e-90 336.3 287 59.9
Lj4g0017392 Lotus japonicus HOM05D006162 ORTHO05D007627 4.0e-90 335.9 327 55.7
EL10Ac6g15232 Beta vulgaris HOM05D006162 ORTHO05D007627 6.9e-90 335.1 372 47.8
PSO675G6781 Papaver somniferum HOM05D006162 ORTHO05D007627 1.5e-89 334.0 366 49.2
vmacro18056 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 5.8e-89 332.0 321 56.1
PSO541G4150 Papaver somniferum HOM05D006162 ORTHO05D007627 9.9e-89 331.3 366 48.9
HanXRQChr14g0446061 Helianthus annuus HOM05D006162 ORTHO05D007627 1.7e-88 330.5 370 48.9
BolC3t20037H Brassica oleracea HOM05D006162 ORTHO05D007627 2.2e-88 330.1 337 51.9
BcaC01g00286 Brassica carinata HOM05D006162 ORTHO05D007627 6.4e-88 328.6 335 51.9
Carub.0007s0129 Capsella rubella HOM05D006162 ORTHO05D007627 6.4e-88 328.6 362 51.4
Sed0011946 Sechium edule HOM05D006162 ORTHO05D007627 1.9e-87 327.0 328 55.2
C03p77810 Brassica napus HOM05D006162 ORTHO05D007627 5.4e-87 325.5 338 52.1
Psat7g049400 Pisum sativum HOM05D006162 ORTHO05D007627 1.2e-86 324.3 336 52.7
Nitab4.5_0007426g0010 Nicotiana tabacum HOM05D006162 ORTHO05D007627 1.6e-86 323.9 362 50.3
Thhalv10025021m.g Eutrema salsugineum HOM05D006162 ORTHO05D007627 2.1e-86 323.6 362 50.8
Lj4A860G2 Lonicera japonica HOM05D006162 ORTHO05D007627 2.1e-86 323.6 410 46.8
Migut.H02454 Erythranthe guttata HOM05D006162 ORTHO05D007627 4.6e-86 322.4 343 50.4
Ca_17673_v3 Cicer arietinum L. HOM05D006162 ORTHO05D007627 1.0e-85 321.2 340 52.1
BcaB03g12289 Brassica carinata HOM05D006162 ORTHO05D007627 1.3e-85 320.9 334 51.2
CAN.G452.13 Capsicum annuum HOM05D006162 ORTHO05D007627 1.3e-85 320.9 353 49.0
MBI17_g27203_MAGBIO Magnolia biondii HOM05D006162 ORTHO05D007627 1.3e-85 320.9 375 48.0
TPR.G2184 Trifolium pratense HOM05D006162 ORTHO05D007627 1.7e-85 320.5 310 54.2
BraA08t34318Z Brassica rapa HOM05D006162 ORTHO05D007627 3.9e-85 319.3 333 51.1
A08p23610 Brassica napus HOM05D006162 ORTHO05D007627 6.6e-85 318.5 333 51.1
AUR62003642 Chenopodium quinoa HOM05D006162 ORTHO05D007627 6.6e-85 318.5 367 47.1
Medtr8g092350 Medicago truncatula HOM05D006162 ORTHO05D007627 1.6e-83 313.9 343 50.1
Sopen04g022820 Solanum pennellii HOM05D006162 ORTHO05D007627 4.0e-82 309.3 352 47.7
Aqoxy6G00404 Aquilegia oxysepala HOM05D006162 ORTHO05D007627 1.5e-81 307.4 316 51.6
ECA238G0813 Erigeron canadensis HOM05D006162 ORTHO05D007627 3.4e-81 306.2 297 55.2
DCAR_011465 Daucus carota HOM05D006162 ORTHO05D007627 2.2e-80 303.5 364 47.0
PGR102G2965 Punica granatum HOM05D006162 ORTHO05D007627 4.2e-79 299.3 351 47.9
Nitab4.5_0005242g0040 Nicotiana tabacum HOM05D006162 ORTHO05D007627 5.4e-79 298.9 371 47.2
Ah.02g123760 Amaranthus hybridus HOM05D006162 ORTHO05D007627 7.1e-79 298.5 364 45.9
ATR0584G096 Amborella trichopoda HOM05D006162 ORTHO05D007627 1.1e-76 291.2 327 47.7
unitig_899.g14618 Utricularia gibba HOM05D006162 ORTHO05D007627 7.1e-71 271.9 337 43.0
FAN26G3317 Fragaria x ananassa HOM05D006162 ORTHO05D007627 3.0e-69 266.5 190 64.7
CSS0015273 Camellia sinensis var. sinensis HOM05D006162 ORTHO05D007627 2.8e-67 260.0 366 43.7
Zm00001eb082910 Zea mays HOM05D006162 ORTHO05D007627 2.8e-67 260.0 334 46.1
Lj1g0016947 Lotus japonicus HOM05D006162 ORTHO05D007627 3.7e-67 259.6 348 46.0
SGA_v2.0_scaffold2G01268 Striga asiatica HOM05D006162 ORTHO05D007627 2.6e-65 253.4 364 42.9
Sc16g0004090 Simmondsia chinensis HOM05D006162 ORTHO05D007627 4.2e-63 246.1 224 52.2
Peaxi162Scf00025g03226 Petunia axillaris HOM05D006162 ORTHO05D007627 7.1e-63 245.4 207 56.5
Lj1g0027635 Lotus japonicus HOM05D006162 ORTHO05D007627 4.6e-62 242.7 298 46.6
Solyc04g051410.4 Solanum lycopersicum HOM05D006162 ORTHO05D007627 6.0e-62 242.3 224 53.1
PGSC0003DMG400019694 Solanum tuberosum HOM05D006162 ORTHO05D007627 5.7e-60 235.7 201 55.2
Hma1.2p1_1688F.1_g297590 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 3.4e-57 226.5 175 62.3
CDE08G0720 Ceratophyllum demersum HOM05D006162 ORTHO05D007627 8.5e-56 221.9 215 50.7
SEGI_22619 Sequoiadendron giganteum HOM05D006162 ORTHO05D007627 1.1e-55 221.5 345 38.6
CARHR247340 Cardamine hirsuta HOM05D006162 ORTHO05D007627 2.1e-54 217.2 248 50.8
FAN19G1907 Fragaria x ananassa HOM05D006162 ORTHO05D007627 2.8e-51 206.8 320 40.3
Oeu001984.1 Olea europaea HOM05D006162 ORTHO05D007627 5.3e-50 202.6 226 46.9
HPP92_009257 Vanilla planifolia HOM05D006162 ORTHO05D007627 7.0e-42 175.6 327 35.5
AUR62017952 Chenopodium quinoa HOM05D006162 ORTHO05D007627 1.5e-41 174.5 329 35.3
Pp3c18_18540 Physcomitrium patens HOM05D006162 ORTHO05D007627 5.5e-39 166.0 352 34.1
Mapoly0008s0182 Marchantia polymorpha HOM05D006162 ORTHO05D007627 7.2e-39 165.6 321 33.3
SMO340G0295 Selaginella moellendorffii HOM05D006162 ORTHO05D007627 8.8e-29 132.1 250 35.6
CBR_g28670 Chara braunii HOM05D006162 ORTHO05D007627 9.1e-26 122.1 297 30.0
Zm00001eb159190 Zea mays HOM05D006162 ORTHO05D007627 2.7e-25 120.6 124 55.6
AagrBONN_evm.TU.Sc2ySwM_368.1435 Anthoceros agrestis HOM05D006162 ORTHO05D007627 1.0e-24 118.6 288 32.3
Hma1.2p1_0220F.1_g092940 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 1.4e-18 98.2 149 46.3
Lj1g0005085 Lotus japonicus HOM05D006162 ORTHO05D007627 4.5e-17 93.2 168 41.1
arahy.Tifrunner.gnm1.ann1.NX5YGM Arachis hypogaea HOM05D006162 ORTHO05D007627 1.3e-16 91.7 129 45.0
arahy.Tifrunner.gnm1.ann1.RXB70W Arachis hypogaea HOM05D005572 ORTHO05D007627 2.5e-15 87.4 151 38.4
Peaxi162Scf00025g03225 Petunia axillaris HOM05D006162 ORTHO05D007627 8.9e-13 79.0 138 38.4
arahy.Tifrunner.gnm1.ann1.PN8NU7 Arachis hypogaea HOM05D006162 ORTHO05D007627 2.0e-12 77.8 73 54.8
AUR62044023 Chenopodium quinoa HOM05D006162 ORTHO05D007627 1.3e-11 75.1 233 27.9
Solyc04g051400.2 Solanum lycopersicum HOM05D006162 ORTHO05D007627 1.7e-11 74.7 138 38.4
arahy.Tifrunner.gnm1.ann1.1RFJ6T Arachis hypogaea HOM05D005572 ORTHO05D007627 1.8e-10 71.2 52 61.5
MELO3C020973.2 Cucumis melo HOM05D006162 ORTHO05D007627 3.5e-09 67.0 51 54.9
Sc16g0004080 Simmondsia chinensis HOM05D006162 ORTHO05D007627 4.5e-09 66.6 109 41.3
arahy.Tifrunner.gnm1.ann1.7P1RA8 Arachis hypogaea HOM05D002714 ORTHO05D003085 1.9e-07 61.2 226 28.3
arahy.Tifrunner.gnm1.ann1.R84QR1 Arachis hypogaea HOM05D002714 ORTHO05D003085 1.9e-07 61.2 226 28.3
ClCG10G008910 Citrullus lanatus HOM05D002714 ORTHO05D003085 1.9e-07 61.2 232 27.2
Lj2A547G21 Lonicera japonica HOM05D002714 ORTHO05D003085 2.5e-07 60.8 231 28.6
Solyc04g056290.3 Solanum lycopersicum HOM05D002714 ORTHO05D003085 3.3e-07 60.5 224 28.6
Sopen04g025180 Solanum pennellii HOM05D002714 ORTHO05D003085 3.3e-07 60.5 224 28.1
SGA_v2.0_scaffold45G17314 Striga asiatica HOM05D002714 ORTHO05D003085 4.3e-07 60.1 223 27.4
Gohir.D03G037500 Gossypium hirsutum HOM05D002714 ORTHO05D003085 7.3e-07 59.3 219 26.5
Nn5g28803 Nelumbo nucifera HOM05D006162 ORTHO05D007627 7.3e-07 59.3 106 36.8
TWI74G0008 Tripterygium wilfordii HOM05D002714 ORTHO05D003085 7.3e-07 59.3 226 27.9
EL10Ac6g15114 Beta vulgaris HOM05D002714 ORTHO05D003085 9.5e-07 58.9 223 27.4
Rhsim08G0010900 Rhododendron simsii HOM05D002714 ORTHO05D003085 9.5e-07 58.9 228 28.1
Eucgr.I00440 Eucalyptus grandis HOM05D002714 ORTHO05D003085 1.2e-06 58.5 227 28.2
Sed0023248 Sechium edule HOM05D000344 ORTHO05D005296 1.2e-06 58.5 276 27.9
Hund06380 Selenicereus undatus HOM05D002714 ORTHO05D003085 1.2e-06 58.5 226 27.0
Prupe.6G187800 Prunus persica HOM05D002714 ORTHO05D003085 1.6e-06 58.2 224 27.7
COL.COLO4_27253 Corchorus olitorius HOM05D002714 ORTHO05D003085 2.1e-06 57.8 224 27.7
Lalb_Chr08g0231031 Lupinus albus HOM05D002714 ORTHO05D003085 2.1e-06 57.8 227 27.8
Zm00001eb006870 Zea mays HOM05D002714 ORTHO05D003085 2.1e-06 57.8 224 27.7
Thhalv10000204m.g Eutrema salsugineum HOM05D002714 ORTHO05D003085 2.8e-06 57.4 224 27.2
Glyma.18G016800 Glycine max HOM05D002714 ORTHO05D003085 2.8e-06 57.4 227 27.8
Gohir.A02G142900 Gossypium hirsutum HOM05D002714 ORTHO05D003085 2.8e-06 57.4 219 26.5
Potri.007G093600 Populus trichocarpa HOM05D002714 ORTHO05D003085 2.8e-06 57.4 224 27.7
FvH4_1g20720 Fragaria vesca HOM05D002714 ORTHO05D003085 3.6e-06 57.0 224 27.7
FAN19G1805 Fragaria x ananassa HOM05D002714 ORTHO05D003085 3.6e-06 57.0 224 27.7
FAN28G0114 Fragaria x ananassa HOM05D002714 ORTHO05D003085 3.6e-06 57.0 224 27.7
Gohir.A11G202200 Gossypium hirsutum HOM05D002714 ORTHO05D003085 3.6e-06 57.0 234 28.2
Gorai.007G237200 Gossypium raimondii HOM05D002714 ORTHO05D003085 3.6e-06 57.0 234 28.2
Manes.13G075650 Manihot esculenta HOM05D002714 ORTHO05D003085 3.6e-06 57.0 224 27.7
Sabra07G0077500 Salix brachista HOM05D002714 ORTHO05D003085 3.6e-06 57.0 220 26.8
THA.LOC104801697 Tarenaya hassleriana HOM05D002714 ORTHO05D003085 3.6e-06 57.0 221 26.7
Aqoxy6G00781 Aquilegia oxysepala HOM05D002714 ORTHO05D003085 4.7e-06 56.6 224 27.2
CDE10G0650 Ceratophyllum demersum HOM05D002714 ORTHO05D003085 4.7e-06 56.6 231 27.3
AUR62013129 Chenopodium quinoa HOM05D002714 ORTHO05D003085 4.7e-06 56.6 227 27.8
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 4.7e-06 56.6 240 27.5
Migut.N01068 Erythranthe guttata HOM05D002714 ORTHO05D003085 4.7e-06 56.6 224 25.9
FAN23G1972 Fragaria x ananassa HOM05D002714 ORTHO05D003085 4.7e-06 56.6 224 27.7
Glyma.11G240500 Glycine max HOM05D002714 ORTHO05D003085 4.7e-06 56.6 224 27.7
Nitab4.5_0001619g0040 Nicotiana tabacum HOM05D002714 ORTHO05D003085 4.7e-06 56.6 230 27.4
PRCOL_00006116 Prasinoderma coloniale HOM05D002714 ORTHO05D003085 4.7e-06 56.6 222 26.1
QL06p049284 Quercus lobata HOM05D002714 ORTHO05D003085 4.7e-06 56.6 224 28.1
Sed0003839 Sechium edule HOM05D002714 ORTHO05D003085 4.7e-06 56.6 224 27.7
CANSAT01G0036 Cannabis sativa HOM05D002714 ORTHO05D003085 6.1e-06 56.2 226 25.7
Gohir.A12G088000 Gossypium hirsutum HOM05D002714 ORTHO05D003085 6.1e-06 56.2 234 26.9
Nitab4.5_0002533g0090 Nicotiana tabacum HOM05D002714 ORTHO05D003085 6.1e-06 56.2 227 27.8
Cfa021409 Carpinus fangiana HOM05D000945 ORTHO05D000919 8.0e-06 55.8 262 26.0
Dinv05557 Davidia involucrata HOM05D002714 ORTHO05D003085 8.0e-06 55.8 224 27.7
MD01G1031200 Malus domestica HOM05D002714 ORTHO05D003085 8.0e-06 55.8 224 27.2
Medtr3g087140 Medicago truncatula HOM05D002714 ORTHO05D003085 8.0e-06 55.8 226 27.4
Oeu002171.1 Olea europaea HOM05D002714 ORTHO05D003085 8.0e-06 55.8 223 26.0
Oeu036418.1 Olea europaea HOM05D002714 ORTHO05D003085 8.0e-06 55.8 224 26.8
GSVIVG01034269001 Vitis vinifera HOM05D002714 ORTHO05D003085 8.0e-06 55.8 224 26.8


User provided reference genes

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