Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.3171 Acer truncatum HOM05D002720 ORTHO05D002901 1.1e-26 122.5 60 100.0
Atru.chr4.2236 Acer truncatum HOM05D002720 ORTHO05D002901 4.4e-23 110.5 59 89.8
vmacro08407 Vaccinium macrocarpon HOM05D002720 ORTHO05D002901 6.6e-19 96.7 59 74.6
PGR119G0175 Punica granatum HOM05D002720 ORTHO05D002901 1.1e-18 95.9 59 76.3
MELO3C026776.2 Cucumis melo HOM05D002720 ORTHO05D002901 1.5e-18 95.5 59 72.9
CsaV3_2G013070 Cucumis sativus L. HOM05D002720 ORTHO05D002901 1.5e-18 95.5 59 72.9
Rhsim04G0190900 Rhododendron simsii HOM05D002720 ORTHO05D002901 1.5e-18 95.5 59 72.9
vmacro08613 Vaccinium macrocarpon HOM05D002720 ORTHO05D002901 1.9e-18 95.1 59 72.9
PGR004G0769 Punica granatum HOM05D002720 ORTHO05D002901 3.3e-18 94.4 59 72.9
Haze_07193 Corylus avellana HOM05D002720 ORTHO05D002901 7.3e-18 93.2 59 72.9
Duzib114G0436 Durio zibethinus HOM05D002720 ORTHO05D002901 7.3e-18 93.2 59 71.2
Cpa.g.sc2.369 Carica papaya HOM05D002720 ORTHO05D002901 9.5e-18 92.8 59 69.5
CiPaw.12G002900 Carya illinoinensis HOM05D002720 ORTHO05D002901 9.5e-18 92.8 59 69.5
Potri.008G161700 Populus trichocarpa HOM05D002720 ORTHO05D002901 9.5e-18 92.8 59 69.5
Rhsim04G0191400 Rhododendron simsii HOM05D002720 ORTHO05D002901 9.5e-18 92.8 59 71.2
EL10Ac9g20857 Beta vulgaris HOM05D002720 ORTHO05D002901 2.1e-17 91.7 59 71.2
Cfa018743 Carpinus fangiana HOM05D002720 ORTHO05D002901 2.1e-17 91.7 59 71.2
MD16G1207700 Malus domestica HOM05D002720 ORTHO05D002901 2.1e-17 91.7 59 66.1
Manes.07G037400 Manihot esculenta HOM05D002720 ORTHO05D002901 2.1e-17 91.7 59 72.9
Thecc.10G145800 Theobroma cacao HOM05D002720 ORTHO05D002901 2.1e-17 91.7 59 71.2
Eucgr.H03255 Eucalyptus grandis HOM05D002720 ORTHO05D002901 2.8e-17 91.3 59 72.9
Eucgr.L02850 Eucalyptus grandis HOM05D002720 ORTHO05D002901 2.8e-17 91.3 59 72.9
Actinidia40090 Actinidia chinensis HOM05D002720 ORTHO05D002901 3.6e-17 90.9 59 71.2
Duzib114G1034 Durio zibethinus HOM05D002720 ORTHO05D002901 3.6e-17 90.9 59 69.5
Sopen03g037280 Solanum pennellii HOM05D002720 ORTHO05D002901 3.6e-17 90.9 59 71.2
GSVIVG01018108001 Vitis vinifera HOM05D002720 ORTHO05D002901 3.6e-17 90.9 59 69.5
Dinv44630 Davidia involucrata HOM05D002720 ORTHO05D002901 4.7e-17 90.5 59 66.1
Gohir.A05G283100 Gossypium hirsutum HOM05D002720 ORTHO05D002901 4.7e-17 90.5 59 66.1
SHI00593 Sapria himalayana HOM05D002720 ORTHO05D002901 4.7e-17 90.5 59 69.5
SHI27528 Sapria himalayana HOM05D002720 ORTHO05D002901 4.7e-17 90.5 59 69.5
CANSAT78G0519 Cannabis sativa HOM05D002720 ORTHO05D002901 6.2e-17 90.1 59 67.8
AUR62019525 Chenopodium quinoa HOM05D002720 ORTHO05D002901 8.1e-17 89.7 59 67.8
AUR62036114 Chenopodium quinoa HOM05D002720 ORTHO05D002901 8.1e-17 89.7 59 67.8
Ciclev10006012m.g Citrus clementina HOM05D002720 ORTHO05D002901 8.1e-17 89.7 59 64.4
Sabra10G0031500 Salix brachista HOM05D002720 ORTHO05D002901 8.1e-17 89.7 59 67.8
Thecc.10G145600 Theobroma cacao HOM05D002720 ORTHO05D002901 8.1e-17 89.7 59 69.5
Eucgr.H03254 Eucalyptus grandis HOM05D002720 ORTHO05D002901 1.1e-16 89.4 59 71.2
Sp7g12770 Schrenkiella parvula HOM05D002720 ORTHO05D002901 1.1e-16 89.4 59 66.1
Thecc.10G146200 Theobroma cacao HOM05D002720 ORTHO05D002901 1.1e-16 89.4 59 69.5
Hma1.2p1_0065F.1_g035630 Hydrangea macrophylla HOM05D002720 ORTHO05D002901 1.4e-16 89.0 59 64.4
Aa31LG9G2670 Aethionema arabicum HOM05D002720 ORTHO05D002901 1.8e-16 88.6 59 67.8
PGSC0003DMG400014251 Solanum tuberosum HOM05D002720 ORTHO05D002901 1.8e-16 88.6 59 67.8
Ah.09g233110 Amaranthus hybridus HOM05D002720 ORTHO05D002901 2.3e-16 88.2 59 66.1
AL7G41430 Arabidopsis lyrata HOM05D002720 ORTHO05D002901 2.3e-16 88.2 59 66.1
AT4G14660 Arabidopsis thaliana HOM05D002720 ORTHO05D002901 2.3e-16 88.2 59 66.1
Cc02_g21580 Coffea canephora HOM05D002720 ORTHO05D002901 2.3e-16 88.2 59 67.8
Gohir.D05G284100 Gossypium hirsutum HOM05D002720 ORTHO05D002901 2.3e-16 88.2 59 64.4
Gorai.009G298700 Gossypium raimondii HOM05D002720 ORTHO05D002901 2.3e-16 88.2 59 64.4
QL09p012558 Quercus lobata HOM05D002720 ORTHO05D002901 2.3e-16 88.2 59 64.4
Sed0027773 Sechium edule HOM05D002720 ORTHO05D002901 2.3e-16 88.2 59 69.5
QL09p012554 Quercus lobata HOM05D002720 ORTHO05D002901 3.1e-16 87.8 59 64.4
Lj6C656T10 Lonicera japonica HOM05D002720 ORTHO05D002901 4.0e-16 87.4 59 66.1
HanXRQChr03g0092471 Helianthus annuus HOM05D002720 ORTHO05D002901 5.2e-16 87.0 59 66.1
Lsat_1_v5_gn_3_125620 Lactuca sativa HOM05D002720 ORTHO05D002901 5.2e-16 87.0 59 66.1
Prupe.1G030000 Prunus persica HOM05D002720 ORTHO05D002901 5.2e-16 87.0 59 64.4
Potri.010G077300 Populus trichocarpa HOM05D002720 ORTHO05D002901 6.8e-16 86.7 59 66.1
Sc19g0003810 Simmondsia chinensis HOM05D002720 ORTHO05D002901 6.8e-16 86.7 59 64.4
PGSC0003DMG400008310 Solanum tuberosum HOM05D002720 ORTHO05D002901 6.8e-16 86.7 59 64.4
TWI73G0137 Tripterygium wilfordii HOM05D002720 ORTHO05D002901 6.8e-16 86.7 59 62.7
Carub.0007s2754 Capsella rubella HOM05D002720 ORTHO05D002901 8.9e-16 86.3 59 64.4
Lalb_Chr16g0384831 Lupinus albus HOM05D002720 ORTHO05D002901 8.9e-16 86.3 59 67.8
Medtr1g475140 Medicago truncatula HOM05D002720 ORTHO05D002901 8.9e-16 86.3 59 66.1
SalBow2G1684 Salvia bowleyana HOM05D002720 ORTHO05D002901 8.9e-16 86.3 59 66.1
CARHR221020 Cardamine hirsuta HOM05D002720 ORTHO05D002901 1.2e-15 85.9 59 64.4
Lalb_Chr06g0169331 Lupinus albus HOM05D002720 ORTHO05D002901 1.2e-15 85.9 59 66.1
Phvul.L002059 Phaseolus vulgaris HOM05D002720 ORTHO05D002901 1.2e-15 85.9 59 69.5
FAN07G0794 Fragaria x ananassa HOM05D002720 ORTHO05D002901 2.0e-15 85.1 59 61.0
PGSC0003DMG400028430 Solanum tuberosum HOM05D002720 ORTHO05D002901 2.0e-15 85.1 59 62.7
THA.LOC104808579 Tarenaya hassleriana HOM05D002720 ORTHO05D002901 2.0e-15 85.1 59 62.7
TPR.G28896 Trifolium pratense HOM05D002720 ORTHO05D002901 2.0e-15 85.1 59 66.1
MSTRG.9927 Avicennia marina HOM05D002720 ORTHO05D002901 2.6e-15 84.7 59 62.7
BcaB04g18254 Brassica carinata HOM05D002720 ORTHO05D002901 2.6e-15 84.7 59 61.0
CAN.G650.21 Capsicum annuum HOM05D002720 ORTHO05D002901 3.4e-15 84.3 59 66.1
CARHR098850 Cardamine hirsuta HOM05D002720 ORTHO05D002901 3.4e-15 84.3 59 59.3
Psat6g128440 Pisum sativum HOM05D002720 ORTHO05D002901 3.4e-15 84.3 59 66.1
Nitab4.5_0006814g0010 Nicotiana tabacum HOM05D002720 ORTHO05D002901 4.4e-15 84.0 59 62.7
BcaC07g37842 Brassica carinata HOM05D002720 ORTHO05D002901 5.8e-15 83.6 59 59.3
A08p11370 Brassica napus HOM05D002720 ORTHO05D002901 5.8e-15 83.6 59 59.3
BolC8t48229H Brassica oleracea HOM05D002720 ORTHO05D002901 5.8e-15 83.6 59 59.3
BraA08t33130Z Brassica rapa HOM05D002720 ORTHO05D002901 5.8e-15 83.6 59 59.3
BcaB06g28069 Brassica carinata HOM05D002720 ORTHO05D002901 7.5e-15 83.2 59 59.3
C01p41270 Brassica napus HOM05D002720 ORTHO05D002901 7.5e-15 83.2 59 59.3
BolC1t04085H Brassica oleracea HOM05D002720 ORTHO05D002901 7.5e-15 83.2 59 59.3
BolC1t04087H Brassica oleracea HOM05D002720 ORTHO05D002901 7.5e-15 83.2 59 59.3
BraA01t03351Z Brassica rapa HOM05D002720 ORTHO05D002901 7.5e-15 83.2 59 59.3
FAN12G1351 Fragaria x ananassa HOM05D002720 ORTHO05D002901 7.5e-15 83.2 59 61.0
VMungo0720G2991 Vigna mungo HOM05D002720 ORTHO05D002901 7.5e-15 83.2 59 66.1
DCAR_002773 Daucus carota HOM05D002117 ORTHO05D002151 9.8e-15 82.8 59 61.0
FAN17G1273 Fragaria x ananassa HOM05D002720 ORTHO05D002901 9.8e-15 82.8 59 59.3
Nitab4.5_0000695g0070 Nicotiana tabacum HOM05D002720 ORTHO05D002901 9.8e-15 82.8 59 61.0
Hund05271 Selenicereus undatus HOM05D002720 ORTHO05D002901 9.8e-15 82.8 59 66.1
ECA240G3546 Erigeron canadensis HOM05D002720 ORTHO05D002901 1.3e-14 82.4 59 61.0
Peaxi162Scf00065g00144 Petunia axillaris HOM05D002720 ORTHO05D002901 1.3e-14 82.4 59 64.4
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 1.7e-14 82.0 59 62.7
DCAR_027272 Daucus carota HOM05D002720 ORTHO05D002901 1.7e-14 82.0 59 59.3
Glyma.20G204700 Glycine max HOM05D002720 ORTHO05D002901 1.7e-14 82.0 59 66.1
RcHm_v2.0_Chr4g0390271 Rosa chinensis HOM05D002720 ORTHO05D002901 1.7e-14 82.0 59 57.6
BcaC09g49218 Brassica carinata HOM05D002720 ORTHO05D002901 2.2e-14 81.6 59 57.6
FvH4_4g12050 Fragaria vesca HOM05D002720 ORTHO05D002901 2.2e-14 81.6 59 59.3
FAN12G2103 Fragaria x ananassa HOM05D002720 ORTHO05D002901 2.2e-14 81.6 59 59.3
Lj5g0005689 Lotus japonicus HOM05D002720 ORTHO05D002901 2.2e-14 81.6 59 62.7
Lj5g0020726 Lotus japonicus HOM05D002720 ORTHO05D002901 2.2e-14 81.6 59 62.7
Solyc06g033895.1 Solanum lycopersicum HOM05D002720 ORTHO05D002901 2.2e-14 81.6 59 62.7
Solyc06g033910.2 Solanum lycopersicum HOM05D002720 ORTHO05D002901 2.2e-14 81.6 59 62.7
Aqoxy3G01073 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 2.9e-14 81.3 59 57.6
Thhalv10026369m.g Eutrema salsugineum HOM05D002720 ORTHO05D002901 2.9e-14 81.3 59 59.3
Oeu030668.1 Olea europaea HOM05D002720 ORTHO05D002901 3.7e-14 80.9 59 57.6
MSTRG.4098 Avicennia marina HOM05D002720 ORTHO05D002901 4.9e-14 80.5 59 59.3
DCAR_024224 Daucus carota HOM05D002492 ORTHO05D002621 4.9e-14 80.5 59 59.3
Sopen06g014100 Solanum pennellii HOM05D002720 ORTHO05D002901 6.4e-14 80.1 59 61.0
TAR633G1171 Trochodendron aralioides HOM05D002720 ORTHO05D002901 8.3e-14 79.7 59 57.6
BcaB04g20488 Brassica carinata HOM05D002720 ORTHO05D002901 1.1e-13 79.3 59 57.6
COL.COLO4_20716 Corchorus olitorius HOM05D002720 ORTHO05D002901 1.1e-13 79.3 59 59.3
Migut.G00425 Erythranthe guttata HOM05D002720 ORTHO05D002901 1.1e-13 79.3 59 54.2
A01p32260 Brassica napus HOM05D002720 ORTHO05D002901 3.2e-13 77.8 59 57.6
CAN.G2602.2 Capsicum annuum HOM05D002720 ORTHO05D002901 3.2e-13 77.8 59 61.0
COL.COLO4_15186 Corchorus olitorius HOM05D002720 ORTHO05D002901 3.2e-13 77.8 58 60.3
FAN12G3038 Fragaria x ananassa HOM05D002720 ORTHO05D002901 4.1e-13 77.4 57 57.9
RcHm_v2.0_Chr4g0390261 Rosa chinensis HOM05D002720 ORTHO05D002901 9.2e-13 76.3 59 55.9
SalBow6G3689 Salvia bowleyana HOM05D002720 ORTHO05D002901 9.2e-13 76.3 59 55.9
Aqoxy5G00329 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 1.2e-12 75.9 59 52.5
Nn3g19523 Nelumbo nucifera HOM05D002720 ORTHO05D002901 1.2e-12 75.9 59 59.3
unitig_899.g14887 Utricularia gibba HOM05D002720 ORTHO05D002901 1.2e-12 75.9 59 57.6
Nn1g02586 Nelumbo nucifera HOM05D002720 ORTHO05D002901 1.6e-12 75.5 59 61.0
Nitab4.5_0005312g0010 Nicotiana tabacum HOM05D002720 ORTHO05D002901 1.6e-12 75.5 56 62.5
AUR62019670 Chenopodium quinoa HOM05D002720 ORTHO05D002901 3.5e-12 74.3 52 61.5
Migut.G00434 Erythranthe guttata HOM05D002720 ORTHO05D002901 6.0e-12 73.6 59 50.8
MBI04_g39240_MAGBIO Magnolia biondii HOM05D002720 ORTHO05D002901 7.8e-12 73.2 59 55.9
Sopen08g015260 Solanum pennellii HOM05D002720 ORTHO05D002901 7.8e-12 73.2 50 62.0
Peaxi162Scf00065g00145 Petunia axillaris HOM05D002720 ORTHO05D002901 2.3e-11 71.6 59 55.9
RcHm_v2.0_Chr4g0389991 Rosa chinensis HOM05D002720 ORTHO05D002901 2.3e-11 71.6 59 50.8
Thhalv10022369m.g Eutrema salsugineum HOM05D002720 ORTHO05D002901 3.0e-11 71.2 60 53.3
AL3G37250 Arabidopsis lyrata HOM05D002720 ORTHO05D002901 5.1e-11 70.5 59 54.2
SGA_v2.0_scaffold88G27291 Striga asiatica HOM05D002720 ORTHO05D002901 6.6e-11 70.1 59 50.8
AT3G22900 Arabidopsis thaliana HOM05D002720 ORTHO05D002901 1.5e-10 68.9 59 52.5
PSO339G3626 Papaver somniferum HOM05D002720 ORTHO05D002901 2.5e-10 68.2 59 45.8
PSO384G2822 Papaver somniferum HOM05D002720 ORTHO05D002901 2.5e-10 68.2 59 45.8
CDE09G0699 Ceratophyllum demersum HOM05D002720 ORTHO05D002901 9.5e-10 66.2 59 49.2
unitig_899.g14889 Utricularia gibba HOM05D002720 ORTHO05D002901 9.5e-10 66.2 58 50.0
HPP92_020538 Vanilla planifolia HOM05D002720 ORTHO05D002901 9.5e-10 66.2 58 48.3
Atru.chr4.2257 Acer truncatum HOM05D002720 ORTHO05D002901 2.8e-09 64.7 36 86.1
Carub.0003s2303 Capsella rubella HOM05D002720 ORTHO05D002901 2.8e-09 64.7 59 49.2
FAN17G0863 Fragaria x ananassa HOM05D002720 ORTHO05D002901 4.7e-09 63.9 59 47.5
PSO541G3791 Papaver somniferum HOM05D002720 ORTHO05D002901 4.7e-09 63.9 59 42.4
FvH4_4g02510 Fragaria vesca HOM05D002720 ORTHO05D002901 6.2e-09 63.5 59 47.5
FAN12G2349 Fragaria x ananassa HOM05D002720 ORTHO05D002901 6.2e-09 63.5 59 47.5
PSO017G3909 Papaver somniferum HOM05D002720 ORTHO05D002901 1.8e-08 62.0 55 45.5
Dinv29916 Davidia involucrata HOM05D002720 ORTHO05D002901 3.1e-08 61.2 39 69.2
Duzib235G0592 Durio zibethinus HOM05D002720 ORTHO05D002901 3.1e-08 61.2 52 55.8
CARHR098840 Cardamine hirsuta HOM05D002720 ORTHO05D002901 4.0e-08 60.8 59 44.1
Ciclev10006285m.g Citrus clementina HOM05D002720 ORTHO05D002901 1.2e-07 59.3 59 47.5
Solyc03g118380.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 1.2e-07 59.3 36 72.2
Os05g0224700 Oryza sativa ssp. japonica HOM05D002720 ORTHO05D002901 1.5e-07 58.9 58 44.8
QL06p015591 Quercus lobata HOM05D002720 ORTHO05D002901 1.5e-07 58.9 59 49.2
Os05g0157100 Oryza sativa ssp. japonica HOM05D002720 ORTHO05D002901 2.0e-07 58.5 58 46.6
Cfa008382 Carpinus fangiana HOM05D002720 ORTHO05D002901 2.6e-07 58.2 59 47.5
Sopen02g019870 Solanum pennellii HOM05D002720 ORTHO05D002901 2.6e-07 58.2 36 66.7
Zm00001eb282600 Zea mays HOM05D002720 ORTHO05D002901 2.6e-07 58.2 58 41.4
Medtr1g069100 Medicago truncatula HOM05D002720 ORTHO05D002901 3.4e-07 57.8 68 42.6
Atru.chr4.2235 Acer truncatum HOM05D002720 ORTHO05D002901 4.4e-07 57.4 59 45.8
CSS0039978 Camellia sinensis var. sinensis HOM05D002720 ORTHO05D002901 4.4e-07 57.4 36 66.7
MD13G1206500 Malus domestica HOM05D002720 ORTHO05D002901 9.9e-07 56.2 38 57.9
Cfa021571 Carpinus fangiana HOM05D002720 ORTHO05D002901 4.9e-06 53.9 58 44.8
COL.COLO4_15784 Corchorus olitorius HOM05D002720 ORTHO05D002901 4.9e-06 53.9 59 40.7
CSS0035657 Camellia sinensis var. sinensis HOM05D002720 ORTHO05D002901 8.4e-06 53.1 33 66.7
CiPaw.02G116800 Carya illinoinensis HOM05D002720 ORTHO05D002901 8.4e-06 53.1 59 44.1


User provided reference genes

Program Settings