Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 2.5e-113 412.1 208 100.0
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 7.6e-107 390.6 208 95.2
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.4e-63 246.9 207 58.5
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 4.4e-62 241.9 205 57.6
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 3.7e-61 238.8 207 56.5
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 5.4e-60 235.0 203 55.7
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 9.2e-60 234.2 204 60.3
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.2e-59 233.8 207 57.5
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.6e-59 233.4 204 60.8
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.3e-58 230.3 202 60.9
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.7e-58 229.9 202 55.9
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 5.0e-58 228.4 206 54.9
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 1.1e-57 227.3 203 57.1
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 1.9e-57 226.5 204 55.9
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 2.5e-57 226.1 204 56.4
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 3.3e-57 225.7 203 52.7
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 5.6e-57 224.9 223 52.5
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 5.6e-57 224.9 204 55.9
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 2.1e-56 223.0 206 54.4
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.6e-56 222.2 203 55.2
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.0e-55 220.7 203 54.7
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.1e-55 219.2 203 53.2
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 6.8e-55 218.0 207 54.1
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 6.8e-55 218.0 207 54.1
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 6.8e-55 218.0 203 54.2
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.2e-54 217.2 203 54.2
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 2.0e-54 216.5 205 54.1
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 2.0e-54 216.5 203 54.2
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.0e-54 216.5 206 53.4
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.6e-54 216.1 203 54.7
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.4e-54 215.3 206 53.4
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.4e-54 215.3 202 52.5
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.8e-54 214.9 206 52.4
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 5.8e-54 214.9 203 54.2
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 7.5e-54 214.5 203 51.7
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.7e-53 213.4 206 52.9
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 2.2e-53 213.0 224 49.6
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.2e-53 213.0 203 53.7
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 9.2e-52 207.6 203 51.7
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 9.2e-52 207.6 203 54.7
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 2.0e-51 206.5 202 51.5
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 1.7e-50 203.4 203 51.2
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.9e-50 202.2 204 52.9
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 5.0e-50 201.8 202 50.0
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 8.6e-50 201.1 128 68.8
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 1.1e-49 200.7 206 52.4
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.9e-49 199.9 116 77.6
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.9e-49 199.9 120 74.2
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.5e-49 199.5 122 69.7
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.5e-49 199.5 203 51.7
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 4.3e-49 198.7 129 66.7
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 5.6e-49 198.4 202 47.5
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 5.6e-49 198.4 173 54.3
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 5.6e-49 198.4 120 71.7
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 7.3e-49 198.0 199 50.8
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 9.5e-49 197.6 120 73.3
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.2e-48 197.2 128 68.8
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.2e-48 197.2 128 68.8
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 2.1e-48 196.4 203 49.8
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 2.1e-48 196.4 120 71.7
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.8e-48 196.1 202 52.5
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 2.8e-48 196.1 128 68.8
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 1.8e-47 193.4 112 73.2
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.8e-47 193.4 121 71.9
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.3e-47 193.0 202 51.5
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 6.8e-47 191.4 128 66.4
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 8.9e-47 191.0 159 56.6
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 3.4e-46 189.1 154 58.4
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 5.8e-46 188.3 128 65.6
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 7.5e-46 188.0 157 55.4
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 7.5e-46 188.0 155 56.8
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 7.5e-46 188.0 128 64.1
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 7.5e-46 188.0 206 47.6
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 9.8e-46 187.6 165 53.3
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 9.8e-46 187.6 162 54.9
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 9.8e-46 187.6 162 54.9
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 9.8e-46 187.6 162 54.9
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 9.8e-46 187.6 162 54.9
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 9.8e-46 187.6 156 57.7
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.7e-45 186.8 144 59.0
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 2.9e-45 186.0 143 59.4
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.9e-45 186.0 162 54.9
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.9e-45 186.0 162 54.9
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.4e-45 184.9 113 70.8
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 8.3e-45 184.5 128 63.3
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 8.3e-45 184.5 209 44.5
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 8.3e-45 184.5 209 44.5
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 8.3e-45 184.5 122 65.6
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.4e-44 183.7 202 45.0
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 5.4e-44 181.8 133 61.7
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 2.7e-43 179.5 133 60.9
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 3.5e-43 179.1 206 46.1
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.0e-42 177.6 163 54.6
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 3.0e-42 176.0 149 57.0
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 8.6e-42 174.5 204 45.1
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 8.6e-42 174.5 166 48.8
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.1e-41 174.1 206 46.1
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.5e-41 173.7 121 62.8
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.9e-41 173.3 171 48.0
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 2.5e-41 172.9 119 62.2
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 4.3e-41 172.2 127 60.6
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 5.6e-41 171.8 166 50.0
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 7.3e-41 171.4 210 45.7
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 2.8e-40 169.5 159 50.9
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 3.6e-40 169.1 160 51.9
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 3.6e-40 169.1 171 46.8
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 3.6e-40 169.1 203 42.9
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.6e-40 169.1 203 44.3
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 4.7e-40 168.7 161 50.9
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 4.7e-40 168.7 154 49.4
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 6.2e-40 168.3 165 50.3
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.2e-40 168.3 210 45.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 6.2e-40 168.3 171 46.8
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 1.1e-39 167.5 198 46.0
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.8e-39 166.8 131 55.0
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 3.1e-39 166.0 137 57.7
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.8e-39 164.9 116 58.6
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.2e-38 164.1 161 50.3
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.2e-38 164.1 161 50.3
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.2e-38 164.1 161 50.3
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.2e-38 164.1 140 57.9
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.5e-38 163.7 116 61.2
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 7.5e-38 161.4 119 58.8
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.5e-38 161.4 113 61.1
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.5e-38 161.4 113 60.2
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.7e-37 160.2 127 55.9
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.1e-36 157.5 129 55.0
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.4e-36 157.1 214 40.7
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.4e-36 157.1 202 42.1
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 4.1e-36 155.6 196 42.9
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.4e-36 155.2 137 51.1
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 2.7e-35 152.9 198 40.9
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 4.6e-35 152.1 127 54.3
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.6e-34 148.3 111 55.9
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 6.2e-32 141.7 113 55.8
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 2.4e-31 139.8 157 43.3
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.1e-31 139.4 103 55.3
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 3.4e-30 136.0 125 48.8
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 2.2e-29 133.3 120 44.2
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 6.4e-29 131.7 120 44.2
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 8.4e-29 131.3 137 44.5
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 7.1e-28 128.3 189 39.7
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 7.1e-28 128.3 127 47.2
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 6.0e-27 125.2 122 48.4
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.3e-26 124.0 103 55.3
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.7e-26 123.6 108 56.5
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.9e-26 122.5 124 46.8
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.1e-25 120.9 109 50.5
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 4.3e-25 119.0 121 43.8
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.3e-25 119.0 96 56.2
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 3.6e-24 115.9 107 50.5
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.6e-24 115.9 93 55.9
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 4.0e-23 112.5 107 45.8
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.2e-22 110.9 83 56.6
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.0e-22 110.2 132 45.5
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.4e-22 109.0 126 40.5
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 9.9e-22 107.8 136 41.2
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 2.9e-21 106.3 140 36.4
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.6e-19 99.0 107 42.1
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-18 97.4 147 36.1
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.7e-18 97.1 147 36.1
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 3.0e-18 96.3 61 72.1
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.7e-18 94.7 73 57.5
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.7e-18 94.7 81 50.6
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 2.8e-16 89.7 147 34.7
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 2.8e-16 89.7 119 40.3
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.1e-15 86.3 67 53.7
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 1.4e-12 77.4 151 32.5
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 8.7e-10 68.2 99 37.4
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.1e-08 63.5 42 57.1
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 3.7e-08 62.8 59 52.5


User provided reference genes

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