Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr4.1889 Acer truncatum HOM05D004885 ORTHO05D006124 1.8e-47 192.2 96 100.0
Atru.chr3.136 Acer truncatum HOM05D004885 ORTHO05D006124 1.3e-37 159.5 95 82.1
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 6.8e-34 147.1 95 70.5
Thecc.01G005900 Theobroma cacao HOM05D004885 ORTHO05D006124 1.5e-33 146.0 95 70.5
Duzib147G0190 Durio zibethinus HOM05D004885 ORTHO05D006124 4.4e-33 144.4 95 70.5
Sabra05G0033700 Salix brachista HOM05D004885 ORTHO05D006124 4.4e-33 144.4 95 73.7
Potri.005G030000 Populus trichocarpa HOM05D004885 ORTHO05D006124 1.3e-32 142.9 95 71.6
Potri.005G028900 Populus trichocarpa HOM05D004885 ORTHO05D006124 6.4e-32 140.6 95 71.6
Gohir.D07G177700 Gossypium hirsutum HOM05D004885 ORTHO05D006124 7.0e-31 137.1 95 66.3
AL3G17570 Arabidopsis lyrata HOM05D004885 ORTHO05D006124 9.2e-31 136.7 95 68.4
AT3G06540 Arabidopsis thaliana HOM05D004885 ORTHO05D006124 9.2e-31 136.7 95 68.4
TWI09G0982 Tripterygium wilfordii HOM05D004885 ORTHO05D006124 9.2e-31 136.7 95 67.4
TWI53G2056 Tripterygium wilfordii HOM05D004885 ORTHO05D006124 9.2e-31 136.7 95 67.4
Manes.01G155100 Manihot esculenta HOM05D004885 ORTHO05D006124 1.2e-30 136.3 95 67.4
THA.LOC104823506 Tarenaya hassleriana HOM05D004885 ORTHO05D006124 1.2e-30 136.3 95 67.4
Gorai.001G198800 Gossypium raimondii HOM05D004885 ORTHO05D006124 2.0e-30 135.6 95 65.3
CARHR081090 Cardamine hirsuta HOM05D004885 ORTHO05D006124 3.5e-30 134.8 95 67.4
Aa31LG5G17090 Aethionema arabicum HOM05D004885 ORTHO05D006124 4.6e-30 134.4 95 68.4
Thhalv10020408m.g Eutrema salsugineum HOM05D004885 ORTHO05D006124 1.0e-29 133.3 95 66.3
Gohir.A07G170900 Gossypium hirsutum HOM05D004885 ORTHO05D006124 1.0e-29 133.3 95 67.4
CANSAT80G0225 Cannabis sativa HOM05D004885 ORTHO05D006124 1.7e-29 132.5 95 70.5
Carub.0003s0600 Capsella rubella HOM05D004885 ORTHO05D006124 1.7e-29 132.5 95 67.4
QL04p012404 Quercus lobata HOM05D004885 ORTHO05D006124 2.3e-29 132.1 96 68.8
MELO3C013721.2 Cucumis melo HOM05D004885 ORTHO05D006124 3.0e-29 131.7 95 65.3
CsaV3_3G000260 Cucumis sativus L. HOM05D004885 ORTHO05D006124 3.0e-29 131.7 95 65.3
Eucgr.I02226 Eucalyptus grandis HOM05D004885 ORTHO05D006124 3.0e-29 131.7 95 69.5
Ciclev10025327m.g Citrus clementina HOM05D004885 ORTHO05D006124 5.0e-29 131.0 95 65.3
QL04p013021 Quercus lobata HOM05D004885 ORTHO05D006124 6.6e-29 130.6 96 67.7
Sp3g05480 Schrenkiella parvula HOM05D004885 ORTHO05D006124 6.6e-29 130.6 95 65.3
Sed0002359 Sechium edule HOM05D004885 ORTHO05D006124 1.5e-28 129.4 95 63.2
QL09p035161 Quercus lobata HOM05D004885 ORTHO05D006124 1.9e-28 129.0 96 66.7
BraA05t22870Z Brassica rapa HOM05D004885 ORTHO05D006124 4.3e-28 127.9 96 66.7
BolC5t34729H Brassica oleracea HOM05D004885 ORTHO05D006124 1.1e-26 123.2 96 63.5
CiPaw.06G030500 Carya illinoinensis HOM05D004885 ORTHO05D006124 1.1e-26 123.2 97 64.9
GSVIVG01026648001 Vitis vinifera HOM05D004885 ORTHO05D006124 1.1e-26 123.2 83 68.7
Prupe.7G181700 Prunus persica HOM05D004885 ORTHO05D006124 5.2e-26 120.9 95 58.9
Dinv08168 Davidia involucrata HOM05D004885 ORTHO05D006124 1.5e-25 119.4 95 61.1
Hma1.2p1_0085F.1_g044710 Hydrangea macrophylla HOM05D004885 ORTHO05D006124 1.5e-25 119.4 95 62.1
Sopen02g027490 Solanum pennellii HOM05D004885 ORTHO05D006124 2.0e-25 119.0 95 62.1
PGR102G0956 Punica granatum HOM05D004885 ORTHO05D006124 2.6e-25 118.6 95 56.8
Haze_00453 Corylus avellana HOM05D004885 ORTHO05D006124 3.4e-25 118.2 95 65.3
Hma1.2p1_0300F.1_g118050 Hydrangea macrophylla HOM05D004885 ORTHO05D006124 3.4e-25 118.2 95 64.2
Lj4C235G2 Lonicera japonica HOM05D004885 ORTHO05D006124 3.4e-25 118.2 96 62.5
Rhsim08G0027300 Rhododendron simsii HOM05D004885 ORTHO05D006124 3.4e-25 118.2 85 67.1
Solyc02g082730.3 Solanum lycopersicum HOM05D004885 ORTHO05D006124 3.4e-25 118.2 95 62.1
PGSC0003DMG401001521 Solanum tuberosum HOM05D004885 ORTHO05D006124 3.4e-25 118.2 95 62.1
Oeu012449.1 Olea europaea HOM05D004885 ORTHO05D006124 4.4e-25 117.9 95 62.1
vmacro18463 Vaccinium macrocarpon HOM05D004885 ORTHO05D006124 4.4e-25 117.9 95 63.2
Aqoxy3G00208 Aquilegia oxysepala HOM05D004885 ORTHO05D006124 5.8e-25 117.5 95 61.1
Lsat_1_v5_gn_2_73361 Lactuca sativa HOM05D004885 ORTHO05D006124 5.8e-25 117.5 95 56.8
MD02G1117700 Malus domestica HOM05D004885 ORTHO05D006124 7.5e-25 117.1 95 60.0
CAN.G1238.6 Capsicum annuum HOM05D004885 ORTHO05D006124 9.8e-25 116.7 95 60.0
TAR629G2658 Trochodendron aralioides HOM05D004885 ORTHO05D006124 9.8e-25 116.7 95 60.0
MD15G1232400 Malus domestica HOM05D004885 ORTHO05D006124 1.3e-24 116.3 95 60.0
Peaxi162Scf01051g00141 Petunia axillaris HOM05D004885 ORTHO05D006124 2.2e-24 115.5 96 63.5
Nn4g22671 Nelumbo nucifera HOM05D004885 ORTHO05D006124 4.9e-24 114.4 94 58.5
Actinidia22902 Actinidia chinensis HOM05D004885 ORTHO05D006124 6.4e-24 114.0 95 61.1
Migut.C00024 Erythranthe guttata HOM05D004885 ORTHO05D006124 6.4e-24 114.0 83 65.1
Sc16g0001670 Simmondsia chinensis HOM05D004885 ORTHO05D006124 1.1e-23 113.2 83 61.4
ECA238G4274 Erigeron canadensis HOM05D004885 ORTHO05D006124 1.4e-23 112.8 87 59.8
CSS0014238 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 1.9e-23 112.5 95 62.1
FAN26G3465 Fragaria x ananassa HOM05D004885 ORTHO05D006124 1.9e-23 112.5 96 59.4
Dinv40183 Davidia involucrata HOM05D004885 ORTHO05D006124 2.4e-23 112.1 95 57.9
FvH4_1g10450 Fragaria vesca HOM05D004885 ORTHO05D006124 4.1e-23 111.3 96 58.3
HanXRQChr14g0442521 Helianthus annuus HOM05D004885 ORTHO05D006124 4.1e-23 111.3 85 60.0
FAN28G2162 Fragaria x ananassa HOM05D004885 ORTHO05D006124 5.4e-23 110.9 96 58.3
RcHm_v2.0_Chr2g0097311 Rosa chinensis HOM05D004885 ORTHO05D006124 7.1e-23 110.5 96 57.3
Glyma.01G159000 Glycine max HOM05D004885 ORTHO05D006124 9.2e-23 110.2 85 62.4
MD10G1065000 Malus domestica HOM05D004885 ORTHO05D006124 9.2e-23 110.2 96 57.3
Cc07_g11780 Coffea canephora HOM05D004885 ORTHO05D006124 1.6e-22 109.4 96 61.5
Nitab4.5_0001936g0130 Nicotiana tabacum HOM05D004885 ORTHO05D006124 1.6e-22 109.4 95 57.9
Glyma.11G085700 Glycine max HOM05D004885 ORTHO05D006124 6.0e-22 107.5 85 60.0
TPR.G29310 Trifolium pratense HOM05D004885 ORTHO05D006124 6.0e-22 107.5 85 62.4
VMungo1215G0823 Vigna mungo HOM05D004885 ORTHO05D006124 1.0e-21 106.7 85 62.4
Lj2g0026862 Lotus japonicus HOM05D004885 ORTHO05D006124 1.3e-21 106.3 93 57.0
Nitab4.5_0006177g0010 Nicotiana tabacum HOM05D004885 ORTHO05D006124 1.3e-21 106.3 95 56.8
PSO386G0181 Papaver somniferum HOM05D004885 ORTHO05D006124 1.3e-21 106.3 81 60.5
Ca_24978_v3 Cicer arietinum L. HOM05D004885 ORTHO05D006124 2.3e-21 105.5 85 61.2
Medtr5g024150 Medicago truncatula HOM05D004885 ORTHO05D006124 2.3e-21 105.5 87 59.8
Nitab4.5_0024681g0010 Nicotiana tabacum HOM05D004885 ORTHO05D006124 3.0e-21 105.1 83 60.2
arahy.Tifrunner.gnm1.ann1.E2QT4D Arachis hypogaea HOM05D004885 ORTHO05D006124 5.1e-21 104.4 86 61.6
arahy.Tifrunner.gnm1.ann1.P2H8QY Arachis hypogaea HOM05D004885 ORTHO05D006124 5.1e-21 104.4 86 61.6
Phvul.002G116400 Phaseolus vulgaris HOM05D004885 ORTHO05D006124 1.5e-20 102.8 85 61.2
Psat0s2561g0200 Pisum sativum HOM05D004885 ORTHO05D006124 1.9e-20 102.4 85 61.2
unitig_37.g12359 Utricularia gibba HOM05D004885 ORTHO05D006124 1.9e-20 102.4 95 52.6
MBI15_g00077_MAGBIO Magnolia biondii HOM05D004885 ORTHO05D006124 2.5e-20 102.1 95 52.6
SGA_v2.0_scaffold376G50298 Striga asiatica HOM05D004885 ORTHO05D006124 2.5e-20 102.1 95 53.7
Lalb_Chr09g0324741 Lupinus albus HOM05D004885 ORTHO05D006124 3.3e-20 101.7 88 58.0
Atru.chr4.1890 Acer truncatum HOM05D004885 ORTHO05D006124 7.3e-20 100.5 58 82.8
PSO724G1376 Papaver somniferum HOM05D004885 ORTHO05D006124 9.5e-20 100.1 81 58.0
SHI00054 Sapria himalayana HOM05D004885 ORTHO05D006124 9.5e-20 100.1 95 50.5
Hund03605 Selenicereus undatus HOM05D004885 ORTHO05D006124 4.7e-19 97.8 84 57.1
AUR62033951 Chenopodium quinoa HOM05D004885 ORTHO05D006124 1.8e-18 95.9 96 55.2
CDE08G1303 Ceratophyllum demersum HOM05D004885 ORTHO05D006124 2.3e-18 95.5 94 51.1
DCAR_006252 Daucus carota HOM05D004885 ORTHO05D006124 4.0e-18 94.7 83 54.2
HPP92_017799 Vanilla planifolia HOM05D004885 ORTHO05D006124 4.0e-18 94.7 85 54.1
MD17G1057100 Malus domestica HOM05D004885 ORTHO05D006124 8.9e-18 93.6 96 46.9
SEGI_12272 Sequoiadendron giganteum HOM05D004885 ORTHO05D006124 3.4e-17 91.7 95 50.5
CSS0037388 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 2.9e-16 88.6 69 63.8
Os01g0269100 Oryza sativa ssp. japonica HOM05D004885 ORTHO05D006124 8.3e-16 87.0 81 51.9
Zm00001eb333020 Zea mays HOM05D004885 ORTHO05D006124 2.4e-15 85.5 81 50.6
EL10Ac8g19196 Beta vulgaris HOM05D004885 ORTHO05D006124 4.1e-15 84.7 89 49.4
Zm00001eb128670 Zea mays HOM05D004885 ORTHO05D006124 5.4e-15 84.3 81 49.4
Mapoly0007s0130 Marchantia polymorpha HOM05D004885 ORTHO05D006124 1.2e-14 83.2 81 51.9
Cc11_g03220 Coffea canephora HOM05D004885 ORTHO05D006124 2.7e-14 82.0 88 50.0
ATR0605G212 Amborella trichopoda HOM05D004885 ORTHO05D006124 3.9e-13 78.2 81 46.9
SMO137G0095 Selaginella moellendorffii HOM05D004885 ORTHO05D006124 1.9e-12 75.9 81 43.2
AagrBONN_evm.TU.Sc2ySwM_117.1017 Anthoceros agrestis HOM05D004885 ORTHO05D006124 3.3e-12 75.1 78 48.7
Ah.14g085190 Amaranthus hybridus HOM05D004885 ORTHO05D006124 1.2e-11 73.2 96 43.8
Pp3c12_25630 Physcomitrium patens HOM05D004885 ORTHO05D006124 1.6e-11 72.8 96 39.6
CDE06G1258 Ceratophyllum demersum HOM05D004885 ORTHO05D006124 3.6e-11 71.6 64 51.6
CSS0004140 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 1.1e-10 70.1 58 62.1
BcaC05g29192 Brassica carinata HOM05D004885 ORTHO05D032332 3.1e-10 68.6 80 47.5
Sabra05G0083500 Salix brachista HOM05D001516 ORTHO05D001357 3.1e-10 68.6 46 65.2
SHI00102 Sapria himalayana HOM05D004885 ORTHO05D006124 2.0e-09 65.9 74 47.3
TPR.G5176 Trifolium pratense HOM05D004885 ORTHO05D006124 2.6e-09 65.5 53 58.5
CBR_g49718 Chara braunii HOM05D004885 ORTHO05D006124 4.4e-09 64.7 112 30.4
Zm00001eb090210 Zea mays HOM05D004885 ORTHO05D006124 9.9e-09 63.5 74 45.9
C05p54640 Brassica napus HOM05D004885 ORTHO05D032332 6.4e-08 60.8 44 63.6
BolC5t34132H Brassica oleracea HOM05D004885 ORTHO05D032332 6.4e-08 60.8 44 63.6
MCO16G005 Micromonas commoda HOM05D004885 ORTHO05D006124 1.9e-07 59.3 80 37.5


User provided reference genes

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