Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 0.0e+00 1448.7 757 100.0
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 0.0e+00 1216.8 757 83.9
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1147.9 756 79.0
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1146.0 756 78.8
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1139.8 747 78.3
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 0.0e+00 1138.6 747 78.4
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 0.0e+00 1137.5 750 78.0
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 0.0e+00 1133.6 747 78.2
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1130.9 747 77.9
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 0.0e+00 1130.2 751 78.3
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 0.0e+00 1129.0 745 78.1
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 0.0e+00 1128.2 753 77.4
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1127.9 755 77.2
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 0.0e+00 1125.5 757 77.5
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 0.0e+00 1124.8 754 78.4
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 0.0e+00 1122.8 749 77.0
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 0.0e+00 1120.9 754 75.9
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 0.0e+00 1109.7 751 76.2
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 0.0e+00 1105.9 754 75.2
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 0.0e+00 1097.0 756 74.3
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 0.0e+00 1088.2 758 74.7
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 0.0e+00 1081.6 745 74.2
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 0.0e+00 1081.6 756 74.3
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 0.0e+00 1079.7 756 74.6
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 0.0e+00 1078.2 747 75.4
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 0.0e+00 1077.4 747 74.2
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 0.0e+00 1075.5 764 72.5
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 5.2e-312 1074.3 752 73.9
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 1.0e-311 1073.2 758 74.7
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 3.6e-311 1071.2 751 73.5
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 3.6e-311 1071.2 758 74.1
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 1.0e-310 1069.7 749 72.8
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 1.0e-310 1069.7 746 74.4
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 2.3e-310 1068.5 751 74.2
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 3.0e-310 1068.1 758 74.5
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 1.1e-309 1066.2 747 73.9
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 1.5e-309 1065.8 750 73.2
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.9e-309 1065.4 749 75.2
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 2.5e-309 1065.1 746 72.7
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 2.1e-308 1062.0 752 73.0
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 3.7e-308 1061.2 747 73.2
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 3.7e-308 1061.2 748 74.3
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 6.3e-308 1060.4 747 74.4
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 6.3e-308 1060.4 747 74.0
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 8.2e-308 1060.1 757 72.3
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 1.1e-307 1059.7 751 72.6
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 1.1e-307 1059.7 760 72.6
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.1e-307 1059.7 764 72.6
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 3.1e-307 1058.1 739 73.3
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 5.3e-307 1057.4 764 72.6
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 6.9e-307 1057.0 745 73.8
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 9.0e-307 1056.6 747 72.3
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 2.0e-306 1055.4 749 73.0
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 2.6e-306 1055.0 752 72.7
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 2.6e-306 1055.0 748 73.7
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 5.9e-306 1053.9 751 73.2
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 7.6e-306 1053.5 780 70.4
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 7.6e-306 1053.5 791 70.2
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 2.9e-305 1051.6 752 73.0
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 2.5e-304 1048.5 773 71.8
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 4.2e-304 1047.7 763 73.1
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 4.2e-304 1047.7 751 74.4
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 5.5e-304 1047.3 751 72.3
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 745 72.3
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 746 73.3
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 2.1e-303 1045.4 748 73.5
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 2.3e-302 1042.0 753 72.1
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 3.0e-302 1041.6 751 71.9
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 3.0e-302 1041.6 792 69.2
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 8.7e-302 1040.0 753 71.8
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 2.5e-301 1038.5 753 71.8
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 2.5e-301 1038.5 781 69.7
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 9.7e-301 1036.6 747 72.3
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 3.8e-297 1024.6 772 69.3
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 3.8e-297 1024.6 740 72.4
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.5e-293 1012.7 753 72.0
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 1.5e-293 1012.7 747 69.1
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 3.3e-293 1011.5 698 75.6
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 1.7e-292 1009.2 683 77.5
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 4.1e-291 1004.6 750 68.9
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.2e-290 1003.0 753 71.6
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 6.5e-289 997.3 656 77.4
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 2.0e-285 985.7 747 68.1
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 2.6e-285 985.3 749 69.6
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 1.3e-284 983.0 747 67.7
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 1.7e-284 982.6 659 76.0
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 2.2e-284 982.2 747 70.4
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 6.3e-284 980.7 694 73.2
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 1.8e-283 979.2 751 67.9
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 6.7e-278 960.7 701 70.9
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 1.2e-277 959.9 655 76.8
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 7.5e-261 904.0 833 58.8
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 2.5e-256 889.0 472 99.8
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 5.4e-243 844.7 745 58.3
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 2.1e-239 832.8 539 79.2
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.1e-239 832.8 716 62.4
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 1.7e-233 813.1 760 57.6
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 3.4e-229 798.9 504 82.3
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 2.9e-228 795.8 552 74.6
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.1e-222 777.3 561 71.7
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 1.4e-219 766.9 613 65.9
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.0e-197 693.3 501 71.7
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 6.9e-182 641.7 620 54.7
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 7.9e-178 628.2 693 53.7
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 3.8e-172 609.4 444 70.3
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 2.2e-167 593.6 436 69.5
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 2.2e-156 557.0 453 65.6
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 2.3e-145 520.4 417 64.0
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 4.9e-135 486.1 432 57.9
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 5.4e-134 482.6 396 63.6
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 1.6e-133 481.1 434 58.1
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 9.5e-131 471.9 370 65.4
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.8e-129 467.6 370 65.1
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 3.3e-123 446.8 505 53.3
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 2.9e-103 380.6 222 85.1
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 1.9e-94 351.3 267 70.4
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 3.0e-92 344.0 234 75.2
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 1.1e-73 282.3 230 66.5
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 4.8e-66 256.9 160 80.6
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 5.3e-65 253.4 168 73.2
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 1.2e-61 242.3 139 88.5
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 2.2e-55 221.5 142 76.8
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 4.2e-54 217.2 293 46.8
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 5.5e-54 216.9 156 70.5
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.0e-52 211.1 131 80.9
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 1.2e-48 199.1 229 52.0
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 2.0e-48 198.4 97 96.9
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 3.2e-46 191.0 311 43.1
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 8.8e-44 183.0 105 86.7
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 9.1e-41 172.9 147 62.6
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 6.5e-39 166.8 142 62.0
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 2.7e-37 161.4 132 62.9
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 2.3e-36 158.3 135 63.7
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 7.7e-32 143.3 291 35.7
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 2.8e-29 134.8 91 72.5
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 3.0e-28 131.3 92 73.9
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 2.4e-25 121.7 134 50.7
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 2.5e-22 111.7 132 47.0
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 2.3e-20 105.1 71 71.8
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 3.2e-17 94.7 63 68.3
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 9.2e-17 93.2 52 84.6
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 1.6e-16 92.4 142 38.0
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 2.7e-16 91.7 53 86.8
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 3.5e-16 91.3 63 65.1
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 1.7e-15 89.0 79 59.5
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 1.7e-15 89.0 52 80.8
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 6.6e-15 87.0 148 41.2
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 4.7e-13 80.9 73 61.6
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 8.9e-12 76.6 44 81.8
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 7.1e-09 67.0 36 94.4
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 2.1e-08 65.5 54 66.7
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.3e-06 58.2 29 100.0
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.3e-06 58.2 29 100.0
MELO3C028166.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.5e-06 56.6 29 96.6


User provided reference genes

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