Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 1.6e-191 672.5 334 100.0
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 5.6e-184 647.5 326 97.2
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 9.0e-142 507.3 333 75.7
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 8.4e-132 474.2 315 72.1
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 3.5e-130 468.8 315 71.4
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 3.5e-130 468.8 318 71.1
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 3.9e-129 465.3 315 71.4
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 8.7e-129 464.2 330 69.1
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.2e-127 459.5 321 69.5
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 6.3e-127 458.0 329 67.8
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 5.3e-126 454.9 329 67.2
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.0e-125 453.0 329 66.9
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 2.6e-125 452.6 328 66.8
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 4.5e-125 451.8 328 67.7
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 5.9e-125 451.4 306 69.6
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 7.2e-123 444.5 328 66.8
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.2e-122 443.7 311 68.8
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.7e-122 442.6 328 66.2
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 2.7e-122 442.6 324 67.0
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 3.6e-122 442.2 319 67.7
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 3.9e-121 438.7 290 72.1
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 8.8e-121 437.6 289 70.2
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 7.4e-120 434.5 290 69.0
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 2.2e-119 433.0 315 65.1
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 4.8e-119 431.8 302 67.5
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 6.3e-119 431.4 286 70.3
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 8.2e-119 431.0 283 71.0
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 2.4e-118 429.5 286 69.2
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 2.4e-118 429.5 294 69.0
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 4.1e-118 428.7 334 62.9
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 5.3e-118 428.3 310 67.4
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 2.6e-117 426.0 309 67.3
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 3.4e-117 425.6 331 63.7
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 4.5e-117 425.2 309 66.7
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 4.5e-117 425.2 326 62.6
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 5.5e-115 418.3 348 60.9
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 4.7e-114 415.2 284 69.0
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 6.1e-114 414.8 321 61.4
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 1.4e-113 413.7 330 61.2
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.8e-113 413.3 319 63.6
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 8.8e-113 411.0 305 65.6
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 7.4e-112 407.9 252 75.4
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 7.4e-112 407.9 287 67.2
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 2.2e-111 406.4 283 67.8
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 2.8e-111 406.0 293 66.6
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 8.2e-111 404.4 304 64.1
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.1e-110 404.1 322 59.6
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.8e-110 403.3 293 63.8
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 4.1e-110 402.1 324 59.9
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 9.1e-110 401.0 300 64.3
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 9.1e-110 401.0 323 61.0
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.6e-109 400.2 247 74.9
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 1.6e-109 400.2 297 64.0
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.0e-109 399.8 328 60.1
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 2.6e-109 399.4 292 65.4
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 3.5e-109 399.1 258 69.8
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 5.9e-109 398.3 297 64.0
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 6.5e-108 394.8 325 56.9
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 3.2e-107 392.5 250 73.2
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 5.5e-107 391.7 322 57.8
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 7.2e-107 391.3 287 63.1
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.6e-106 390.2 286 62.6
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 2.1e-106 389.8 256 70.7
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 2.7e-106 389.4 286 61.9
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 4.7e-106 388.7 323 57.6
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 4.7e-106 388.7 286 61.9
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 6.1e-106 388.3 308 61.0
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 6.1e-106 388.3 322 57.5
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 8.0e-106 387.9 327 56.0
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 1.0e-105 387.5 318 57.5
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 2.3e-105 386.3 251 71.3
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 3.0e-105 386.0 286 61.5
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 3.0e-105 386.0 286 61.5
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 8.8e-105 384.4 288 62.2
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.1e-104 384.0 286 61.2
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 2.8e-103 379.4 322 55.9
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.1e-102 377.5 248 70.2
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 2.4e-102 376.3 283 60.4
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 1.6e-101 373.6 248 70.6
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 5.9e-101 371.7 230 72.6
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 1.5e-99 367.1 346 55.5
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 4.2e-99 365.5 259 64.9
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.0e-97 360.9 329 56.8
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.4e-97 360.5 329 56.8
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.5e-96 357.1 302 56.6
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 1.4e-94 350.5 262 61.5
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 1.6e-93 347.1 286 57.3
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 2.2e-92 343.2 252 67.5
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.9e-91 340.1 316 52.8
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 5.5e-91 338.6 286 55.9
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 2.1e-90 336.7 322 54.7
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 8.0e-90 334.7 328 55.2
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 1.3e-87 327.4 226 69.5
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.8e-82 309.7 190 72.1
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.0e-81 307.8 316 49.7
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 6.8e-81 305.1 603 33.2
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 2.6e-80 303.1 283 54.8
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.4e-79 298.5 303 53.5
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.3e-76 290.8 196 66.8
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 8.6e-76 288.1 280 47.5
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 1.1e-75 287.7 303 44.9
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.1e-74 283.5 190 65.8
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 3.7e-71 272.7 164 74.4
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 3.7e-71 272.7 279 45.2
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 7.0e-70 268.5 279 47.0
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 4.9e-63 245.7 157 70.7
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 5.4e-62 242.3 158 67.7
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 7.8e-61 238.4 270 49.6
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 4.0e-57 226.1 242 52.5
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.5e-56 224.2 242 51.7
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.6e-56 223.4 177 59.3
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 3.4e-56 223.0 161 66.5
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.7e-52 210.7 166 62.7
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.9e-46 190.7 182 56.6
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 3.3e-43 179.9 127 63.8
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.2e-42 175.6 196 48.5
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.8e-41 174.1 228 44.7
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 3.8e-39 166.4 216 34.7
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 4.9e-39 166.0 114 63.2
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.1e-38 164.9 148 56.1
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 6.7e-36 155.6 127 59.8
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.1e-35 154.8 292 34.2
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 9.6e-35 151.8 143 56.6
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.7e-31 141.0 102 68.6
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 8.4e-31 138.7 126 54.8
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 1.9e-30 137.5 100 69.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 7.9e-29 132.1 76 75.0
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 6.5e-23 112.5 185 41.1
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.8e-20 104.4 76 59.2
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.3e-17 92.8 67 67.2
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 6.5e-15 85.9 105 50.5
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 7.9e-13 79.0 85 48.2
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 5.7e-11 72.8 79 49.4


User provided reference genes

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