Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 0.0e+00 1501.5 800 100.0
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 0.0e+00 1221.1 802 78.8
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 0.0e+00 1176.8 820 76.1
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 0.0e+00 1174.8 825 78.3
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 0.0e+00 1149.0 822 74.9
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 0.0e+00 1139.0 820 76.0
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 0.0e+00 1137.9 820 73.7
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 0.0e+00 1116.3 820 73.0
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 0.0e+00 1109.7 810 71.1
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 0.0e+00 1085.9 814 69.8
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 0.0e+00 1084.7 820 71.1
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 0.0e+00 1083.9 810 70.7
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 0.0e+00 1077.4 810 70.4
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.5e-312 1073.5 810 70.4
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.7e-311 1071.6 812 69.6
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.9e-310 1068.9 810 70.4
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 2.1e-306 1055.4 814 69.3
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.4e-305 1052.0 694 78.0
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 4.0e-305 1051.2 813 68.1
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 3.4e-304 1048.1 820 68.7
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 4.9e-303 1044.3 816 67.2
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.4e-302 1042.7 819 67.5
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 9.2e-302 1040.0 827 68.3
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 6.0e-301 1037.3 828 68.8
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 7.8e-301 1036.9 815 67.4
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 1.7e-300 1035.8 829 66.6
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 6.6e-300 1033.9 818 68.1
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.1e-299 1033.1 831 66.5
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 5.2e-297 1024.2 780 70.9
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.5e-296 1022.7 808 68.2
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.0e-296 1022.3 805 67.5
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 2.6e-296 1021.9 856 65.0
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 1.4e-294 1016.1 818 67.7
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 5.4e-294 1014.2 819 67.0
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 3.5e-293 1011.5 815 66.3
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 5.1e-292 1007.7 819 66.1
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.6e-291 1004.2 813 66.8
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 2.3e-284 982.2 822 67.2
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 8.7e-284 980.3 827 65.2
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.1e-283 979.9 822 66.9
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 4.8e-282 974.5 853 65.7
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 4.8e-282 974.5 840 65.6
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.3e-279 966.5 818 63.4
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.9e-279 965.3 817 66.3
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 1.8e-276 956.1 720 70.7
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 2.9e-271 938.7 818 65.0
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.6e-269 932.9 822 64.8
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 1.1e-267 926.8 817 61.9
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 4.8e-266 921.4 877 59.0
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 3.4e-264 915.2 811 60.7
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.1e-262 910.2 811 60.5
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 4.6e-261 904.8 858 57.7
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 1.0e-260 903.7 828 60.0
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 3.0e-260 902.1 865 59.1
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 3.0e-260 902.1 835 61.8
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 4.3e-259 898.3 830 60.1
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.4e-257 893.3 841 60.4
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.4e-257 892.5 810 61.5
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 3.6e-253 878.6 939 55.7
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 6.1e-253 877.9 809 60.4
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 1.4e-249 866.7 912 55.9
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 7.0e-249 864.4 921 56.1
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 1.5e-248 863.2 935 54.4
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 2.9e-247 859.0 768 61.2
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 4.2e-246 855.1 824 59.1
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 3.9e-244 848.6 822 59.5
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 8.8e-244 847.4 817 58.1
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 8.8e-244 847.4 920 55.3
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 8.8e-244 847.4 825 61.6
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 3.7e-242 842.0 923 56.2
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 3.7e-242 842.0 683 68.1
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 8.2e-242 840.9 835 56.9
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 1.1e-241 840.5 807 59.9
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 3.1e-241 839.0 834 57.2
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 4.5e-240 835.1 828 57.1
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 3.6e-237 825.5 812 58.0
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.0e-236 823.9 816 56.7
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 5.2e-236 821.6 983 51.1
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 5.7e-235 818.1 897 55.4
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 2.8e-234 815.8 821 57.9
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 4.8e-234 815.1 904 55.3
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 3.1e-233 812.4 913 54.8
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 4.5e-232 808.5 900 54.8
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.9e-231 805.8 833 56.2
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.1e-229 799.7 542 75.1
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 4.4e-227 792.0 558 72.4
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.1e-222 777.3 770 59.2
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.1e-222 777.3 468 82.9
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.1e-221 773.1 812 57.3
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.1e-213 746.5 821 54.6
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 2.8e-213 746.1 1045 47.8
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 4.0e-212 742.3 751 57.3
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.9e-210 735.3 823 53.1
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 4.9e-210 735.3 911 49.1
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 8.6e-207 724.5 911 49.1
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 4.3e-206 722.2 828 52.1
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.8e-205 719.5 628 65.0
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.1e-204 717.6 807 52.7
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 4.0e-204 715.7 790 55.7
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 4.0e-204 715.7 803 54.8
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.4e-203 712.2 818 51.0
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 1.3e-202 710.7 800 51.2
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 1.5e-198 697.2 826 51.6
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 8.1e-197 691.4 815 54.6
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 1.6e-192 677.2 796 50.9
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.5e-190 670.6 834 49.6
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.8e-188 663.7 1105 43.0
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 6.4e-186 655.2 414 77.1
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 8.4e-186 654.8 388 82.2
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 7.6e-179 631.7 355 85.6
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.3e-173 614.4 342 86.3
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 1.4e-172 610.9 355 83.1
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 7.6e-163 578.6 803 46.5
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 5.5e-161 572.4 666 52.0
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 5.6e-158 562.4 447 66.0
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 1.1e-156 558.1 361 76.2
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.1e-156 558.1 402 68.7
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 2.9e-154 550.1 412 69.2
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 7.1e-153 545.4 381 72.2
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.5e-150 537.7 343 75.5
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.4e-147 526.6 501 56.5
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 5.5e-145 519.2 604 51.2
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 7.2e-145 518.8 385 68.8
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 9.7e-142 508.4 352 69.9
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 6.7e-135 485.7 376 67.3
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 1.1e-134 485.0 413 59.1
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 3.1e-132 476.9 322 73.9
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.3e-130 471.5 651 46.1
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 8.5e-130 468.8 296 77.7
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.2e-125 454.1 516 49.0
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.6e-120 438.0 456 56.4
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 3.6e-120 436.8 470 53.4
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 4.7e-120 436.4 274 77.4
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 8.8e-119 432.2 504 49.2
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.8e-116 424.5 439 49.7
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.9e-114 417.2 675 40.6
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.0e-114 416.4 241 86.3
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 1.6e-112 411.4 456 55.7
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 4.4e-110 403.3 333 65.8
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 1.1e-108 398.7 444 50.0
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 7.0e-108 396.0 516 46.5
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 1.5e-105 388.3 565 53.8
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 9.8e-102 375.6 460 51.5
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.8e-95 354.8 468 52.1
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 3.1e-95 354.0 319 57.4
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.9e-92 344.7 185 89.7
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 2.0e-91 341.3 472 45.1
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 2.0e-91 341.3 451 46.3
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 6.6e-82 309.7 610 37.2
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.6e-82 309.7 347 53.9
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.8e-79 301.6 420 41.7
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.2e-78 298.9 268 59.0
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 3.2e-76 290.8 197 70.1
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 6.2e-72 276.6 182 73.6
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 4.4e-70 270.4 409 45.2
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 2.6e-62 244.6 410 36.6
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 3.4e-62 244.2 322 41.9
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 9.9e-62 242.7 465 41.9
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 9.3e-60 236.1 185 65.9
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 2.7e-59 234.6 183 65.6
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 3.3e-57 227.6 151 72.2
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 8.1e-56 223.0 464 42.0
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.5e-49 202.2 366 38.3
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 1.6e-48 198.7 317 38.2
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 6.9e-47 193.4 148 62.8
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.3e-45 189.1 101 90.1
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 2.5e-36 158.3 85 87.1
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 4.2e-28 131.0 223 42.6
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 6.1e-27 127.1 218 40.8
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 3.1e-23 114.8 63 85.7
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 1.2e-22 112.8 65 83.1
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.5e-22 112.5 127 55.9
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.6e-22 111.7 66 80.3
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 7.9e-19 100.1 65 72.3
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 5.1e-18 97.4 58 74.1
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.2e-11 76.3 39 94.9
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 4.7e-11 74.3 59 64.4
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 1.8e-10 72.4 52 69.2
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.1e-09 69.7 47 74.5
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.2e-08 65.5 41 82.9


User provided reference genes

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