Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3558 Acer truncatum HOM05D002614 ORTHO05D002794 3.5e-50 201.4 112 100.0
Atru.chr2.3538 Acer truncatum HOM05D002614 ORTHO05D002794 5.9e-13 77.8 45 97.8
Duzib213G0069 Durio zibethinus HOM05D002614 ORTHO05D002794 1.9e-11 72.8 45 88.9
Gohir.D13G140200 Gossypium hirsutum HOM05D002614 ORTHO05D002794 1.9e-11 72.8 45 88.9
Gorai.013G156800 Gossypium raimondii HOM05D002614 ORTHO05D002794 1.9e-11 72.8 45 88.9
VMungo0464G1101 Vigna mungo HOM05D002614 ORTHO05D002794 1.9e-11 72.8 45 91.1
Cfa020270 Carpinus fangiana HOM05D002614 ORTHO05D002794 2.5e-11 72.4 45 91.1
COL.COLO4_09747 Corchorus olitorius HOM05D002614 ORTHO05D002794 2.5e-11 72.4 45 86.7
Duzib268G1221 Durio zibethinus HOM05D002614 ORTHO05D002794 2.5e-11 72.4 45 86.7
Gohir.A13G135800 Gossypium hirsutum HOM05D002614 ORTHO05D002794 2.5e-11 72.4 45 86.7
Lalb_Chr15g0081781 Lupinus albus HOM05D002614 ORTHO05D002794 2.5e-11 72.4 45 88.9
QL08p007888 Quercus lobata HOM05D002614 ORTHO05D002794 2.5e-11 72.4 44 88.6
TPR.G18650 Trifolium pratense HOM05D002614 ORTHO05D002794 2.5e-11 72.4 45 88.9
Ca_14769_v3 Cicer arietinum L. HOM05D002614 ORTHO05D002794 3.2e-11 72.0 45 86.7
MD03G1192400 Malus domestica HOM05D002614 ORTHO05D002794 3.2e-11 72.0 45 86.7
Psat5g175720 Pisum sativum HOM05D002614 ORTHO05D002794 3.2e-11 72.0 45 86.7
Thecc.07G026000 Theobroma cacao HOM05D002614 ORTHO05D002794 3.2e-11 72.0 44 88.6
Lj8C173G9 Lonicera japonica HOM05D002614 ORTHO05D002794 4.2e-11 71.6 45 88.9
Manes.03G135600 Manihot esculenta HOM05D002614 ORTHO05D002794 4.2e-11 71.6 45 88.9
TWI39G0254 Tripterygium wilfordii HOM05D002614 ORTHO05D002794 4.2e-11 71.6 45 84.4
Glyma.14G017700 Glycine max HOM05D002614 ORTHO05D002794 5.5e-11 71.2 45 84.4
MD11G1208900 Malus domestica HOM05D002614 ORTHO05D002794 5.5e-11 71.2 45 86.7
Phvul.006G048900 Phaseolus vulgaris HOM05D002614 ORTHO05D002794 5.5e-11 71.2 45 88.9
arahy.Tifrunner.gnm1.ann1.496WES Arachis hypogaea HOM05D002614 ORTHO05D002794 7.2e-11 70.9 45 84.4
arahy.Tifrunner.gnm1.ann1.59G793 Arachis hypogaea HOM05D002614 ORTHO05D002794 7.2e-11 70.9 45 84.4
CiPaw.12G134100 Carya illinoinensis HOM05D002614 ORTHO05D002794 7.2e-11 70.9 45 86.7
Lalb_Chr20g0116121 Lupinus albus HOM05D002614 ORTHO05D002794 7.2e-11 70.9 45 84.4
THA.LOC104808157 Tarenaya hassleriana HOM05D002614 ORTHO05D002794 7.2e-11 70.9 47 83.0
Actinidia00115 Actinidia chinensis HOM05D002614 ORTHO05D002794 9.4e-11 70.5 45 82.2
Cpa.g.sc12.242 Carica papaya HOM05D002614 ORTHO05D002794 9.4e-11 70.5 45 86.7
Cc05_g14390 Coffea canephora HOM05D002614 ORTHO05D002794 9.4e-11 70.5 45 84.4
Haze_09752 Corylus avellana HOM05D002614 ORTHO05D002794 9.4e-11 70.5 45 88.9
Dinv22223 Davidia involucrata HOM05D002614 ORTHO05D002794 9.4e-11 70.5 45 86.7
Nitab4.5_0001160g0040 Nicotiana tabacum HOM05D002614 ORTHO05D002794 9.4e-11 70.5 45 84.4
Phvul.008G273200 Phaseolus vulgaris HOM05D002614 ORTHO05D002794 9.4e-11 70.5 45 82.2
CiPaw.09G202300 Carya illinoinensis HOM05D002614 ORTHO05D002794 1.2e-10 70.1 45 86.7
TWI38G0583 Tripterygium wilfordii HOM05D002614 ORTHO05D002794 1.2e-10 70.1 45 82.2
CSS0025854 Camellia sinensis var. sinensis HOM05D002614 ORTHO05D002794 1.6e-10 69.7 45 82.2
Eucgr.F00647 Eucalyptus grandis HOM05D002614 ORTHO05D002794 1.6e-10 69.7 45 80.0
Glyma.08G322600 Glycine max HOM05D002614 ORTHO05D002794 1.6e-10 69.7 45 86.7
Glyma.18G089600 Glycine max HOM05D002614 ORTHO05D002794 1.6e-10 69.7 45 86.7
Lj1C881G8 Lonicera japonica HOM05D002614 ORTHO05D002794 1.6e-10 69.7 45 80.0
vmacro22995 Vaccinium macrocarpon HOM05D002614 ORTHO05D002794 1.6e-10 69.7 45 82.2
HanXRQChr03g0076891 Helianthus annuus HOM05D002614 ORTHO05D002794 2.1e-10 69.3 45 82.2
Prupe.4G224800 Prunus persica HOM05D002614 ORTHO05D002794 2.1e-10 69.3 45 84.4
vmacro09685 Vaccinium macrocarpon HOM05D002614 ORTHO05D002794 2.1e-10 69.3 45 80.0
VMungo0647G1090 Vigna mungo HOM05D002614 ORTHO05D002794 2.1e-10 69.3 45 80.0
Peaxi162Scf00235g00833 Petunia axillaris HOM05D002614 ORTHO05D002794 2.7e-10 68.9 45 80.0
Rhsim04G0016200 Rhododendron simsii HOM05D002614 ORTHO05D002794 2.7e-10 68.9 45 80.0
SGA_v2.0_scaffold478G52217 Striga asiatica HOM05D002614 ORTHO05D002794 2.7e-10 68.9 45 80.0
SGA_v2.0_scaffold97G29138 Striga asiatica HOM05D002614 ORTHO05D002794 2.7e-10 68.9 45 80.0
ClCG09G011110 Citrullus lanatus HOM05D002614 ORTHO05D002794 3.6e-10 68.6 45 77.8
MELO3C013123.2 Cucumis melo HOM05D002614 ORTHO05D002794 3.6e-10 68.6 45 77.8
Lj6g0016595 Lotus japonicus HOM05D002614 ORTHO05D002794 3.6e-10 68.6 45 80.0
LjContig00272g0021698 Lotus japonicus HOM05D002614 ORTHO05D002794 3.6e-10 68.6 45 86.7
SGA_v2.0_scaffold97G29136 Striga asiatica HOM05D002614 ORTHO05D002794 3.6e-10 68.6 44 79.5
FvH4_3g23630 Fragaria vesca HOM05D002614 ORTHO05D002794 4.7e-10 68.2 45 84.4
Lalb_Chr00c48g0412911 Lupinus albus HOM05D002614 ORTHO05D002794 4.7e-10 68.2 45 82.2
Lalb_Chr00c48g0413021 Lupinus albus HOM05D002614 ORTHO05D002794 4.7e-10 68.2 45 82.2
Lalb_Chr04g0248111 Lupinus albus HOM05D002614 ORTHO05D002794 4.7e-10 68.2 45 82.2
Medtr3g055200 Medicago truncatula HOM05D002614 ORTHO05D002794 4.7e-10 68.2 45 82.2
Medtr8g031190 Medicago truncatula HOM05D002614 ORTHO05D002794 4.7e-10 68.2 45 82.2
GSVIVG01037735001 Vitis vinifera HOM05D002614 ORTHO05D002794 4.7e-10 68.2 45 75.6
Migut.M01702 Erythranthe guttata HOM05D002614 ORTHO05D002794 6.1e-10 67.8 45 77.8
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 6.1e-10 67.8 44 84.1
Rhsim06G0224200 Rhododendron simsii HOM05D002614 ORTHO05D002794 8.0e-10 67.4 45 80.0
Solyc07g065030.3 Solanum lycopersicum HOM05D002614 ORTHO05D002794 8.0e-10 67.4 45 77.8
Sopen07g033240 Solanum pennellii HOM05D002614 ORTHO05D002794 8.0e-10 67.4 45 77.8
MSTRG.13002 Avicennia marina HOM05D002614 ORTHO05D002794 1.0e-09 67.0 45 80.0
Oeu005514.1 Olea europaea HOM05D002614 ORTHO05D002794 1.0e-09 67.0 45 82.2
FAN16G1895 Fragaria x ananassa HOM05D002614 ORTHO05D002794 1.4e-09 66.6 45 82.2
Nn5g28068 Nelumbo nucifera HOM05D002614 ORTHO05D002794 1.4e-09 66.6 45 80.0
Nitab4.5_0002051g0080 Nicotiana tabacum HOM05D002614 ORTHO05D002794 1.4e-09 66.6 45 82.2
Nitab4.5_0003869g0080 Nicotiana tabacum HOM05D002614 ORTHO05D002794 1.4e-09 66.6 45 80.0
RcHm_v2.0_Chr5g0041671 Rosa chinensis HOM05D002614 ORTHO05D002794 1.4e-09 66.6 45 82.2
TPR.G30646 Trifolium pratense HOM05D002614 ORTHO05D002794 1.4e-09 66.6 44 81.8
ECA240G2676 Erigeron canadensis HOM05D002614 ORTHO05D002794 1.8e-09 66.2 45 75.6
HanXRQChr05g0159701 Helianthus annuus HOM05D002614 ORTHO05D002794 1.8e-09 66.2 45 73.3
Sc07g0002860 Simmondsia chinensis HOM05D002614 ORTHO05D002794 1.8e-09 66.2 45 73.3
MSTRG.6965 Avicennia marina HOM05D002614 ORTHO05D002794 2.3e-09 65.9 45 75.6
CAN.G337.49 Capsicum annuum HOM05D002614 ORTHO05D002794 2.3e-09 65.9 45 73.3
Nn1g08618 Nelumbo nucifera HOM05D002614 ORTHO05D002794 2.3e-09 65.9 45 77.8
THA.LOC104812405 Tarenaya hassleriana HOM05D002614 ORTHO05D002794 2.3e-09 65.9 45 80.0
CANSAT21G1249 Cannabis sativa HOM05D002614 ORTHO05D002794 3.0e-09 65.5 45 75.6
CANSAT25G0829 Cannabis sativa HOM05D002614 ORTHO05D002794 3.0e-09 65.5 45 75.6
Os08g0277900 Oryza sativa ssp. japonica HOM05D002614 ORTHO05D002794 3.0e-09 65.5 45 73.3
unitig_8.g4787 Utricularia gibba HOM05D002614 ORTHO05D002794 3.0e-09 65.5 45 73.3
FAN25G1971 Fragaria x ananassa HOM05D002614 ORTHO05D002794 4.0e-09 65.1 45 80.0
Gorai.004G032900 Gossypium raimondii HOM05D002614 ORTHO05D002794 4.0e-09 65.1 45 77.8
Actinidia10754 Actinidia chinensis HOM05D002614 ORTHO05D002794 5.2e-09 64.7 45 75.6
CSS0015414 Camellia sinensis var. sinensis HOM05D002614 ORTHO05D002794 5.2e-09 64.7 45 75.6
CDE02G1066 Ceratophyllum demersum HOM05D002614 ORTHO05D002794 5.2e-09 64.7 45 75.6
CsaV3_7G021020 Cucumis sativus L. HOM05D002614 ORTHO05D002794 5.2e-09 64.7 45 73.3
Gohir.A08G024500 Gossypium hirsutum HOM05D002614 ORTHO05D002794 5.2e-09 64.7 45 80.0
Gohir.D08G035000 Gossypium hirsutum HOM05D002614 ORTHO05D002794 5.2e-09 64.7 44 79.5
PGSC0003DMG400022297 Solanum tuberosum HOM05D002614 ORTHO05D002794 5.2e-09 64.7 45 75.6
MBI10_g21033_MAGBIO Magnolia biondii HOM05D002614 ORTHO05D002794 6.8e-09 64.3 47 74.5
Manes.15G065600 Manihot esculenta HOM05D002614 ORTHO05D002794 6.8e-09 64.3 45 80.0
Sed0002435 Sechium edule HOM05D002614 ORTHO05D002794 6.8e-09 64.3 45 73.3
Eucgr.F03509 Eucalyptus grandis HOM05D002614 ORTHO05D002794 8.8e-09 63.9 45 75.6
Thhalv10015786m.g Eutrema salsugineum HOM05D002614 ORTHO05D002794 8.8e-09 63.9 45 77.8
Thhalv10021502m.g Eutrema salsugineum HOM05D002614 ORTHO05D002794 8.8e-09 63.9 45 77.8
Sc03g0008270 Simmondsia chinensis HOM05D002614 ORTHO05D002794 8.8e-09 63.9 45 73.3
SGA_v2.0_scaffold8G04387 Striga asiatica HOM05D002614 ORTHO05D002794 8.8e-09 63.9 45 73.3
Zm00001eb177630 Zea mays HOM05D002614 ORTHO05D002794 8.8e-09 63.9 45 71.1
CAN.G654.4 Capsicum annuum HOM05D002614 ORTHO05D002794 1.2e-08 63.5 45 77.8
CDE09G0058 Ceratophyllum demersum HOM05D002614 ORTHO05D002794 1.2e-08 63.5 45 75.6
Zm00001eb069200 Zea mays HOM05D002614 ORTHO05D002794 1.2e-08 63.5 45 71.1
Thhalv10008662m.g Eutrema salsugineum HOM05D002614 ORTHO05D002794 1.5e-08 63.2 45 77.8
Sed0019395 Sechium edule HOM05D002614 ORTHO05D002794 1.5e-08 63.2 44 75.0
Ciclev10009364m.g Citrus clementina HOM05D002614 ORTHO05D002794 2.0e-08 62.8 45 75.6
Peaxi162Scf01165g00216 Petunia axillaris HOM05D002614 ORTHO05D002794 2.0e-08 62.8 45 75.6
BcaB05g25208 Brassica carinata HOM05D002614 ORTHO05D002794 2.6e-08 62.4 45 75.6
BcaC08g47519 Brassica carinata HOM05D002614 ORTHO05D002794 2.6e-08 62.4 45 75.6
A02p23000 Brassica napus HOM05D002614 ORTHO05D002794 2.6e-08 62.4 45 75.6
BraA02t07297Z Brassica rapa HOM05D002614 ORTHO05D002794 2.6e-08 62.4 45 75.6
A07p44620 Brassica napus HOM05D002614 ORTHO05D002794 3.4e-08 62.0 44 75.0
A09p60970 Brassica napus HOM05D002614 ORTHO05D002794 3.4e-08 62.0 45 75.6
C06p53460 Brassica napus HOM05D002614 ORTHO05D002794 3.4e-08 62.0 44 75.0
BolC6t40361H Brassica oleracea HOM05D002614 ORTHO05D002794 3.4e-08 62.0 44 75.0
BraA07t31971Z Brassica rapa HOM05D002614 ORTHO05D002794 3.4e-08 62.0 44 75.0
BraA09t41470Z Brassica rapa HOM05D002614 ORTHO05D002794 3.4e-08 62.0 45 75.6
Sp1g14450 Schrenkiella parvula HOM05D002614 ORTHO05D002794 3.4e-08 62.0 45 75.6
Sp5g34650 Schrenkiella parvula HOM05D002614 ORTHO05D002794 3.4e-08 62.0 45 75.6
unitig_44.g31551 Utricularia gibba HOM05D002614 ORTHO05D002794 3.4e-08 62.0 45 73.3
Aqoxy2G01531 Aquilegia oxysepala HOM05D002614 ORTHO05D002794 4.4e-08 61.6 45 73.3
Hma1.2p1_1199F.1_g266323 Hydrangea macrophylla HOM05D002614 ORTHO05D002794 4.4e-08 61.6 45 68.9
Hma1.2p1_3177F.1_g333650 Hydrangea macrophylla HOM05D002614 ORTHO05D002794 4.4e-08 61.6 45 68.9
ClCG10G004910 Citrullus lanatus HOM05D002614 ORTHO05D002794 5.7e-08 61.2 44 75.0
AL1G28360 Arabidopsis lyrata HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 73.3
BcaB03g14500 Brassica carinata HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 73.3
BcaC03g15912 Brassica carinata HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 73.3
BcaC05g25593 Brassica carinata HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 73.3
A06p12150 Brassica napus HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 73.3
C05p14390 Brassica napus HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 73.3
C08p44580 Brassica napus HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 73.3
BolC2t09678H Brassica oleracea HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 73.3
BolC5t30166H Brassica oleracea HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 73.3
BolC8t52003H Brassica oleracea HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 73.3
BraA06t24384Z Brassica rapa HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 73.3
Carub.0001s1598 Capsella rubella HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 73.3
HanXRQChr13g0408061 Helianthus annuus HOM05D002614 ORTHO05D002794 7.5e-08 60.8 45 71.1
Oeu054313.1 Olea europaea HOM05D002614 ORTHO05D002794 9.8e-08 60.5 45 73.3
PGR083G1567 Punica granatum HOM05D002614 ORTHO05D002794 9.8e-08 60.5 45 71.1
C02p36760 Brassica napus HOM05D002614 ORTHO05D002794 1.3e-07 60.1 45 71.1
CARHR016710 Cardamine hirsuta HOM05D002614 ORTHO05D002794 1.3e-07 60.1 45 73.3
DCAR_017102 Daucus carota HOM05D002614 ORTHO05D002794 1.3e-07 60.1 45 73.3
AL2G40260 Arabidopsis lyrata HOM05D002614 ORTHO05D002794 1.7e-07 59.7 64 56.2
Carub.0002s2647 Capsella rubella HOM05D002614 ORTHO05D002794 1.7e-07 59.7 45 73.3
Thhalv10019084m.g Eutrema salsugineum HOM05D002614 ORTHO05D002794 1.7e-07 59.7 45 73.3
Lsat_1_v5_gn_5_2800 Lactuca sativa HOM05D002614 ORTHO05D002794 1.7e-07 59.7 40 75.0
CARHR073320 Cardamine hirsuta HOM05D002614 ORTHO05D002794 2.2e-07 59.3 45 73.3
Os02g0119400 Oryza sativa ssp. japonica HOM05D002614 ORTHO05D002794 2.2e-07 59.3 45 68.9
PSO339G1564 Papaver somniferum HOM05D002614 ORTHO05D002794 2.2e-07 59.3 45 75.6
CiPaw.11G195400 Carya illinoinensis HOM05D002614 ORTHO05D002794 2.8e-07 58.9 43 79.1
PSO339G0941 Papaver somniferum HOM05D002614 ORTHO05D002794 2.8e-07 58.9 45 68.9
AT1G16240 Arabidopsis thaliana HOM05D002614 ORTHO05D002794 3.7e-07 58.5 45 68.9
AT1G79590 Arabidopsis thaliana HOM05D002614 ORTHO05D002794 3.7e-07 58.5 45 71.1
CsaV3_3G004560 Cucumis sativus L. HOM05D002614 ORTHO05D002794 3.7e-07 58.5 44 68.2
Gohir.D05G376900 Gossypium hirsutum HOM05D002614 ORTHO05D002794 4.8e-07 58.2 45 73.3
Gorai.009G444600 Gossypium raimondii HOM05D002614 ORTHO05D002794 4.8e-07 58.2 45 73.3
Potri.006G032900 Populus trichocarpa HOM05D002614 ORTHO05D002794 6.3e-07 57.8 45 73.3
PSO063G2176 Papaver somniferum HOM05D002614 ORTHO05D002794 8.3e-07 57.4 45 71.1
HPP92_024443 Vanilla planifolia HOM05D002614 ORTHO05D002794 1.4e-06 56.6 45 66.7
PSO801G0516 Papaver somniferum HOM05D002614 ORTHO05D002794 1.8e-06 56.2 45 66.7
Hund23193 Selenicereus undatus HOM05D002614 ORTHO05D002794 2.4e-06 55.8 43 65.1
MD12G1111800 Malus domestica HOM05D002614 ORTHO05D002794 4.1e-06 55.1 45 68.9
Aa31LG7G760 Aethionema arabicum HOM05D002614 ORTHO05D002794 5.4e-06 54.7 45 64.4
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 5.4e-06 54.7 33 81.8
Gohir.A04G011300 Gossypium hirsutum HOM05D002614 ORTHO05D002794 5.4e-06 54.7 45 66.7
TWI53G2021 Tripterygium wilfordii HOM05D002614 ORTHO05D002794 9.1e-06 53.9 45 64.4


User provided reference genes

Program Settings