Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 3.8e-190 667.9 315 100.0
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 5.5e-133 478.0 313 73.5
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 5.5e-133 478.0 314 73.2
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 8.8e-131 470.7 311 73.0
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 2.2e-129 466.1 313 71.9
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 2.2e-129 466.1 313 71.9
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 2.2e-129 466.1 313 71.9
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 1.8e-128 463.0 315 70.8
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.6e-127 459.9 313 70.0
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 2.0e-127 459.5 309 73.1
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 2.2e-126 456.1 312 70.5
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 3.8e-126 455.3 313 69.6
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 3.2e-125 452.2 308 69.8
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 4.2e-125 451.8 317 70.3
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 4.2e-125 451.8 312 70.5
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.7e-124 449.1 309 69.9
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 3.6e-124 448.7 308 69.2
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 8.0e-124 447.6 308 69.2
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.0e-123 447.2 310 69.7
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.0e-123 447.2 310 69.7
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 1.8e-123 446.4 309 69.6
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 5.2e-123 444.9 321 67.0
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 3.4e-122 442.2 315 69.5
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.4e-122 441.8 310 70.0
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 5.7e-122 441.4 310 69.4
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.7e-121 439.9 319 66.8
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 1.7e-121 439.9 312 67.9
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.1e-120 437.2 312 67.0
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 1.4e-120 436.8 316 68.0
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 2.4e-120 436.0 312 68.3
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 1.7e-118 429.9 311 68.8
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 2.9e-118 429.1 311 68.8
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 3.2e-117 425.6 312 65.4
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 2.8e-116 422.5 319 66.5
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 2.8e-116 422.5 282 70.2
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 3.6e-116 422.2 320 64.4
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 1.4e-115 420.2 315 65.7
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.4e-115 420.2 316 66.5
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.4e-115 420.2 308 65.9
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 1.4e-115 420.2 310 64.2
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 6.8e-115 417.9 311 64.3
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 1.5e-114 416.8 316 65.2
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 3.4e-114 415.6 317 64.7
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 5.7e-114 414.8 316 64.6
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 1.3e-113 413.7 294 69.4
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 3.7e-113 412.1 309 64.4
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 6.3e-113 411.4 282 68.4
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 8.3e-113 411.0 291 68.4
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 1.8e-112 409.8 314 63.1
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 2.4e-112 409.5 293 65.5
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 3.1e-112 409.1 309 65.0
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 3.1e-112 409.1 311 63.7
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 5.4e-112 408.3 313 62.3
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 7.0e-112 407.9 311 64.0
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 9.2e-112 407.5 311 62.4
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 1.2e-111 407.1 314 62.7
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.2e-111 407.1 312 62.8
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 1.6e-111 406.8 309 64.1
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 2.0e-111 406.4 309 64.7
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 2.7e-111 406.0 319 62.1
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 3.5e-111 405.6 337 60.8
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 4.5e-111 405.2 310 64.2
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 4.5e-111 405.2 310 64.2
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 4.5e-111 405.2 310 64.2
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 5.9e-111 404.8 317 63.4
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 7.8e-111 404.4 310 62.3
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 1.0e-110 404.1 311 62.4
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.0e-110 404.1 309 63.4
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.3e-110 403.7 320 62.5
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.3e-110 403.7 309 63.8
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 2.3e-110 402.9 311 62.1
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 2.3e-110 402.9 327 61.5
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 2.3e-110 402.9 315 63.5
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 2.9e-110 402.5 293 65.9
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 2.9e-110 402.5 312 62.8
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 5.0e-110 401.7 317 61.5
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 6.6e-110 401.4 312 61.5
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 1.5e-109 400.2 292 65.8
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 3.3e-109 399.1 320 61.9
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 4.3e-109 398.7 275 65.8
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 1.2e-108 397.1 300 62.3
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 3.6e-108 395.6 320 60.6
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 3.0e-107 392.5 313 60.1
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.2e-106 390.6 300 63.7
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 3.4e-106 389.0 317 60.6
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.7e-105 386.7 281 63.3
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 2.9e-105 386.0 280 64.3
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 4.9e-105 385.2 280 64.3
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 8.3e-105 384.4 229 74.7
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.8e-104 383.3 325 58.5
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 4.6e-103 378.6 270 67.0
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 5.9e-103 378.3 291 61.5
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 2.3e-102 376.3 299 60.5
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 3.0e-102 375.9 310 58.1
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 2.5e-101 372.9 300 60.3
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 2.5e-101 372.9 219 76.3
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.3e-99 366.3 310 59.7
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.6e-98 362.8 309 56.6
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 3.4e-98 362.5 244 68.0
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 2.2e-97 359.8 302 57.6
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 2.9e-97 359.4 219 73.5
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 6.4e-97 358.2 234 71.8
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.1e-96 357.5 308 55.8
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 1.4e-96 357.1 243 65.0
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 1.4e-96 357.1 235 68.5
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.9e-96 356.7 311 55.6
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.4e-96 356.3 308 55.2
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 3.2e-96 355.9 308 57.5
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 4.1e-96 355.5 229 71.6
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 4.1e-96 355.5 310 55.2
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 5.4e-96 355.1 256 66.0
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 5.4e-96 355.1 234 69.7
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 7.8e-95 351.3 309 55.7
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 1.3e-94 350.5 210 74.8
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 1.1e-93 347.4 310 53.9
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 5.6e-93 345.1 199 77.9
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 7.3e-93 344.7 310 53.2
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.6e-92 343.6 313 55.6
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 3.6e-92 342.4 310 53.5
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 3.6e-92 342.4 316 53.5
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 4.7e-92 342.0 310 58.1
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 5.2e-91 338.6 311 55.0
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 6.8e-91 338.2 265 59.2
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 2.0e-90 336.7 246 61.4
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 7.5e-90 334.7 249 61.0
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.3e-89 334.0 237 62.9
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 2.2e-89 333.2 226 65.9
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.9e-89 332.8 232 63.4
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 8.3e-89 331.3 304 54.6
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 1.6e-87 327.0 204 72.5
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 8.6e-86 321.2 304 53.9
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 8.6e-86 321.2 304 53.9
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 8.6e-86 321.2 304 53.9
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 8.6e-86 321.2 304 53.9
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 1.1e-85 320.9 245 64.5
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 4.3e-85 318.9 303 52.1
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 9.5e-85 317.8 304 53.3
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 9.5e-85 317.8 228 62.3
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 8.9e-83 311.2 304 52.6
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 6.4e-81 305.1 234 60.3
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 8.1e-76 288.1 294 48.6
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.8e-75 287.0 312 51.3
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 3.8e-73 279.3 296 48.6
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 4.9e-73 278.9 219 58.0
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 5.4e-72 275.4 199 63.3
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 3.5e-71 272.7 229 53.7
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 5.6e-69 265.4 286 50.0
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 7.3e-69 265.0 264 51.1
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 9.6e-69 264.6 217 57.1
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 4.8e-68 262.3 154 74.7
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 5.3e-67 258.8 238 52.1
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 1.9e-64 250.4 319 44.5
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 4.2e-64 249.2 227 52.4
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 1.3e-62 244.2 284 42.3
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 1.3e-62 244.2 229 48.5
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.5e-61 240.0 229 49.8
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 2.1e-60 236.9 162 63.6
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 4.8e-60 235.7 183 63.9
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 9.0e-59 231.5 234 47.0
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 3.8e-57 226.1 228 45.6
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 2.4e-56 223.4 248 44.8
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 4.2e-56 222.6 130 75.4
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 4.6e-55 219.2 249 42.6
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 3.0e-54 216.5 195 51.8
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 3.9e-54 216.1 196 52.6
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 8.7e-54 214.9 160 65.6
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 4.5e-50 202.6 228 48.2
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 1.4e-48 197.6 152 59.9
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 1.4e-48 197.6 220 42.7
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 2.3e-46 190.3 317 35.0
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 3.3e-45 186.4 109 76.1
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.2e-36 157.1 96 68.8
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 6.9e-35 152.1 87 74.7
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 2.6e-26 123.6 92 60.9
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 6.1e-15 85.9 49 75.5
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 1.0e-14 85.1 78 50.0
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 2.0e-13 80.9 95 46.3
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 4.2e-08 63.2 41 65.9


User provided reference genes

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