Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 9.1e-33 142.9 68 100.0
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 9.1e-33 142.9 68 100.0
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 9.1e-33 142.9 68 100.0
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 3.5e-32 141.0 68 98.5
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 8.5e-31 136.3 69 97.1
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 2.7e-29 131.3 68 94.1
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 5.3e-17 90.5 60 80.0
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 7.0e-17 90.1 60 78.3
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 5.0e-15 84.0 69 69.6
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 6.5e-15 83.6 69 69.6
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 1.1e-14 82.8 66 71.2
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 2.5e-14 81.6 49 81.6
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 2.5e-14 81.6 49 81.6
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 9.4e-14 79.7 62 71.0
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 1.2e-13 79.3 68 66.2
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 1.2e-13 79.3 86 57.0
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.6e-13 79.0 62 69.4
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 2.7e-13 78.2 48 81.2
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 2.7e-13 78.2 48 81.2
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 2.7e-13 78.2 47 80.9
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 3.6e-13 77.8 63 68.3
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 3.6e-13 77.8 86 55.8
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 3.6e-13 77.8 48 79.2
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 3.6e-13 77.8 48 79.2
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 4.7e-13 77.4 75 60.0
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 4.7e-13 77.4 48 77.1
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 8.0e-13 76.6 48 77.1
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 8.0e-13 76.6 48 77.1
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 8.0e-13 76.6 49 75.5
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 8.0e-13 76.6 49 75.5
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.0e-12 76.3 48 77.1
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 1.0e-12 76.3 65 67.7
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 1.0e-12 76.3 62 71.0
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 1.8e-12 75.5 48 77.1
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 2.3e-12 75.1 46 78.3
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 2.3e-12 75.1 46 78.3
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 3.0e-12 74.7 48 75.0
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 3.0e-12 74.7 78 57.7
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 3.0e-12 74.7 78 57.7
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 3.0e-12 74.7 78 57.7
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 3.0e-12 74.7 47 76.6
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 3.0e-12 74.7 48 75.0
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 4.0e-12 74.3 57 70.2
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 5.2e-12 73.9 53 73.6
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 5.2e-12 73.9 48 75.0
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 6.8e-12 73.6 81 55.6
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 6.8e-12 73.6 46 76.1
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 6.8e-12 73.6 79 54.4
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 6.8e-12 73.6 46 76.1
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 8.8e-12 73.2 48 72.9
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 8.8e-12 73.2 46 76.1
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 8.8e-12 73.2 66 62.1
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 8.8e-12 73.2 45 80.0
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.2e-11 72.8 85 54.1
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.2e-11 72.8 56 69.6
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 1.2e-11 72.8 47 74.5
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.2e-11 72.8 48 75.0
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 1.2e-11 72.8 48 75.0
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 1.5e-11 72.4 72 61.1
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.5e-11 72.4 85 51.8
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 2.0e-11 72.0 46 76.1
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 2.0e-11 72.0 46 76.1
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 2.6e-11 71.6 46 76.1
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.6e-11 71.6 46 73.9
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 2.6e-11 71.6 48 68.8
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 2.6e-11 71.6 46 73.9
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.6e-11 71.6 46 76.1
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 2.6e-11 71.6 62 66.1
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 2.6e-11 71.6 44 79.5
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 2.6e-11 71.6 48 70.8
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 3.4e-11 71.2 78 55.1
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 3.4e-11 71.2 77 55.8
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 3.4e-11 71.2 79 57.0
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 3.4e-11 71.2 79 57.0
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 4.4e-11 70.9 44 77.3
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 4.4e-11 70.9 50 72.0
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 4.4e-11 70.9 46 73.9
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 4.4e-11 70.9 50 74.0
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 4.4e-11 70.9 78 53.8
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 5.7e-11 70.5 44 77.3
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 5.7e-11 70.5 44 77.3
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 5.7e-11 70.5 44 77.3
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 5.7e-11 70.5 61 65.6
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 5.7e-11 70.5 44 75.0
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 5.7e-11 70.5 44 75.0
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 7.5e-11 70.1 56 66.1
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 7.5e-11 70.1 56 66.1
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 9.8e-11 69.7 46 73.9
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 9.8e-11 69.7 44 75.0
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 9.8e-11 69.7 44 75.0
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 9.8e-11 69.7 67 61.2
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 9.8e-11 69.7 75 56.0
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 9.8e-11 69.7 75 56.0
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 9.8e-11 69.7 79 55.7
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 9.8e-11 69.7 89 50.6
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.3e-10 69.3 44 72.7
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 1.3e-10 69.3 70 58.6
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 1.3e-10 69.3 79 53.2
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 1.7e-10 68.9 58 63.8
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 1.7e-10 68.9 58 63.8
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 1.7e-10 68.9 58 63.8
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 1.7e-10 68.9 75 54.7
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 1.7e-10 68.9 44 77.3
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 1.7e-10 68.9 44 77.3
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.7e-10 68.9 79 54.4
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 2.2e-10 68.6 80 51.2
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 2.2e-10 68.6 49 67.3
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 2.2e-10 68.6 49 67.3
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 2.2e-10 68.6 81 53.1
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.8e-10 68.2 41 80.5
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.8e-10 68.2 44 75.0
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 2.8e-10 68.2 72 59.7
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.8e-10 68.2 74 54.1
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 3.7e-10 67.8 71 60.6
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 3.7e-10 67.8 61 60.7
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 4.8e-10 67.4 46 69.6
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 4.8e-10 67.4 44 72.7
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 4.8e-10 67.4 67 59.7
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 4.8e-10 67.4 44 72.7
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 6.3e-10 67.0 80 51.2
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 6.3e-10 67.0 49 67.3
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 6.3e-10 67.0 44 72.7
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 6.3e-10 67.0 74 52.7
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 8.3e-10 66.6 58 65.5
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 8.3e-10 66.6 83 50.6
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 8.3e-10 66.6 52 63.5
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 8.3e-10 66.6 76 55.3
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.4e-09 65.9 44 65.9
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.8e-09 65.5 82 50.0
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.8e-09 65.5 49 65.3
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 1.8e-09 65.5 81 50.6
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 1.8e-09 65.5 41 75.6
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.8e-09 65.5 44 68.2
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 3.1e-09 64.7 65 60.0
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 3.1e-09 64.7 79 51.9
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 3.1e-09 64.7 74 54.1
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 4.1e-09 64.3 41 75.6
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 5.4e-09 63.9 76 48.7
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 9.1e-09 63.2 57 59.6
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 9.1e-09 63.2 84 47.6
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 1.6e-08 62.4 57 59.6
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 2.7e-08 61.6 48 62.5
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 2.7e-08 61.6 47 61.7
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 5.9e-08 60.5 83 47.0
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 7.7e-08 60.1 81 48.1
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 7.7e-08 60.1 81 48.1
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 7.7e-08 60.1 81 48.1
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 7.7e-08 60.1 44 61.4
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 2.3e-07 58.5 82 48.8
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 3.8e-07 57.8 62 53.2
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 1.5e-06 55.8 76 47.4
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 1.9e-06 55.5 76 50.0
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 3.3e-06 54.7 81 43.2
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 4.2e-06 54.3 46 54.3
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 7.2e-06 53.5 87 42.5
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 9.5e-06 53.1 62 51.6


User provided reference genes

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