Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 5.1e-139 497.7 241 100.0
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 6.8e-107 391.0 248 77.4
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.4e-91 340.1 246 71.5
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 1.7e-89 333.2 248 69.0
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 8.3e-89 330.9 247 69.2
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 1.1e-88 330.5 238 69.3
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 3.2e-88 328.9 245 69.8
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 3.2e-88 328.9 248 68.5
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 3.2e-88 328.9 238 68.9
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 4.1e-88 328.6 238 69.7
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 2.1e-87 326.2 241 68.5
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 7.8e-87 324.3 246 70.7
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 1.3e-86 323.6 249 67.1
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 3.0e-86 322.4 245 68.6
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 1.1e-85 320.5 246 67.5
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 2.1e-84 316.2 245 67.8
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 4.7e-84 315.1 254 66.5
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 6.2e-84 314.7 241 66.4
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 1.2e-82 310.5 248 67.3
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 2.0e-82 309.7 250 64.8
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 7.6e-82 307.8 241 65.6
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.2e-81 306.2 242 65.3
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 2.9e-81 305.8 245 64.9
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 1.4e-80 303.5 240 63.8
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 4.1e-80 302.0 297 58.2
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 7.1e-80 301.2 239 65.3
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 7.1e-80 301.2 250 64.4
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 1.2e-79 300.4 249 65.5
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 6.6e-78 294.7 239 66.5
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 1.5e-77 293.5 240 63.3
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 1.5e-77 293.5 246 62.2
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 2.5e-77 292.7 244 64.3
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 4.3e-77 292.0 240 64.2
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 5.6e-77 291.6 244 64.8
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 7.3e-77 291.2 283 59.0
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 9.6e-77 290.8 293 56.0
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 2.1e-76 289.7 243 63.8
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 2.1e-76 289.7 240 63.3
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 2.1e-76 289.7 243 61.3
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 2.8e-76 289.3 237 65.0
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 3.6e-76 288.9 237 63.7
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.6e-76 288.9 187 73.8
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 6.2e-76 288.1 190 76.3
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 1.4e-75 287.0 242 64.0
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 3.1e-75 285.8 160 85.6
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 3.1e-75 285.8 160 85.6
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 4.0e-75 285.4 241 63.1
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 1.2e-74 283.9 241 63.5
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.2e-74 283.9 201 69.7
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 2.0e-74 283.1 244 61.1
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 3.4e-74 282.3 244 61.1
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 3.4e-74 282.3 243 62.1
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 4.4e-74 282.0 244 60.7
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 9.9e-74 280.8 158 83.5
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 2.2e-73 279.6 205 69.3
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 3.8e-73 278.9 218 64.7
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 1.1e-72 277.3 169 76.9
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 1.1e-72 277.3 163 79.8
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 3.2e-72 275.8 157 84.7
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 2.1e-71 273.1 172 76.2
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 2.7e-71 272.7 172 76.2
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 3.5e-71 272.3 172 75.6
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 1.0e-70 270.8 184 72.3
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 2.3e-70 269.6 159 81.1
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 3.9e-70 268.9 160 80.6
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 5.1e-70 268.5 165 77.6
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 5.1e-70 268.5 182 72.5
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 5.1e-70 268.5 161 78.9
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 6.6e-70 268.1 172 75.6
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 1.5e-69 266.9 159 79.9
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 1.5e-69 266.9 159 79.9
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.9e-69 266.5 168 77.4
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.5e-69 266.2 159 78.6
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.5e-69 266.2 178 74.2
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 5.6e-69 265.0 152 82.9
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 9.6e-69 264.2 154 81.8
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 1.3e-68 263.8 160 78.8
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 2.1e-68 263.1 157 78.3
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 2.8e-68 262.7 154 79.9
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 6.2e-68 261.5 171 76.0
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 1.8e-67 260.0 158 77.8
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.4e-67 259.6 176 73.3
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 2.4e-67 259.6 157 76.4
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 5.3e-67 258.5 197 66.0
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 5.3e-67 258.5 149 81.9
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 6.9e-67 258.1 160 77.5
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 7.6e-66 254.6 157 76.4
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 1.3e-65 253.8 156 77.6
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 1.7e-65 253.4 156 78.8
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 6.4e-65 251.5 157 73.9
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 1.4e-64 250.4 157 73.2
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 5.4e-64 248.4 417 40.5
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 9.3e-64 247.7 295 50.5
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 2.7e-63 246.1 175 70.3
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 6.0e-63 245.0 151 76.8
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 5.1e-62 241.9 157 70.7
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 1.6e-60 236.9 154 72.7
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 2.1e-60 236.5 198 61.6
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 2.8e-60 236.1 154 72.1
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 6.2e-60 235.0 150 74.7
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 6.2e-60 235.0 166 70.5
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 9.9e-58 227.6 150 70.7
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 2.7e-55 219.5 206 58.3
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 2.3e-54 216.5 177 62.1
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 4.3e-53 212.2 120 85.0
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 7.4e-53 211.5 182 57.1
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 2.1e-52 209.9 162 61.7
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 6.9e-51 204.9 163 56.4
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 2.6e-50 203.0 123 77.2
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 2.7e-47 193.0 163 55.2
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 6.0e-47 191.8 142 69.0
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.0e-46 191.0 155 62.6
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 2.7e-39 166.4 150 54.7
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 5.1e-38 162.2 87 85.1
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 4.5e-34 149.1 138 56.5
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 4.5e-34 149.1 138 56.5
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 1.4e-30 137.5 108 65.7
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 6.3e-28 128.6 85 75.3
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 6.9e-27 125.2 104 51.0
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 5.5e-24 115.5 90 65.6
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 9.4e-24 114.8 120 46.7
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 3.6e-23 112.8 131 51.9
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 9.7e-21 104.8 116 39.7
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 9.7e-21 104.8 132 39.4
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.9e-16 90.5 90 55.6
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 6.7e-14 82.0 82 51.2
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.6e-10 70.9 43 76.7
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 1.3e-09 67.8 38 76.3
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 1.9e-08 63.9 71 43.7
arahy.Tifrunner.gnm1.ann1.QG9RQP Arachis hypogaea HOM05D030826 ORTHO05D023738 4.7e-07 59.3 42 66.7
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 6.1e-07 58.9 105 31.4
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 2.3e-06 57.0 111 32.4
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 3.0e-06 56.6 103 31.1
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 3.0e-06 56.6 98 34.7
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 4.0e-06 56.2 136 27.2
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 4.0e-06 56.2 110 29.1
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 8.8e-06 55.1 102 31.4
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 8.8e-06 55.1 92 35.9


User provided reference genes

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