Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 3.1e-63 245.0 126 100.0
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 1.5e-60 236.1 126 95.2
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 2.0e-54 215.7 130 85.4
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 4.7e-51 204.5 130 82.3
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.0e-50 203.4 130 80.8
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 4.0e-50 201.4 130 79.2
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 5.2e-50 201.1 130 80.8
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 5.2e-50 201.1 130 80.8
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 1.5e-49 199.5 130 80.0
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 2.0e-49 199.1 130 80.8
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 9.8e-49 196.8 130 78.5
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.2e-48 195.7 130 77.7
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 1.1e-47 193.4 130 78.5
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 2.4e-47 192.2 130 76.9
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 2.4e-47 192.2 125 78.4
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 4.1e-47 191.4 130 77.7
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 5.4e-47 191.0 125 80.0
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 7.0e-47 190.7 131 74.0
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 1.2e-46 189.9 125 77.6
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.0e-46 189.1 130 76.2
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.7e-46 188.7 130 73.8
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 4.6e-46 188.0 129 76.0
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 6.0e-46 187.6 125 76.8
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 7.8e-46 187.2 126 74.6
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 7.8e-46 187.2 130 72.3
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 7.8e-46 187.2 130 72.3
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 1.0e-45 186.8 130 74.6
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.0e-45 186.8 130 73.8
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 1.0e-45 186.8 122 76.2
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 1.3e-45 186.4 128 75.0
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 1.3e-45 186.4 130 73.8
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.3e-45 186.4 127 73.2
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 1.3e-45 186.4 127 73.2
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 1.3e-45 186.4 127 73.2
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 1.7e-45 186.0 127 74.0
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 3.9e-45 184.9 130 72.3
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 3.9e-45 184.9 130 72.3
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 3.9e-45 184.9 128 74.2
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 3.9e-45 184.9 128 74.2
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 6.6e-45 184.1 130 70.0
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 6.6e-45 184.1 129 73.6
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 6.6e-45 184.1 131 75.6
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 8.6e-45 183.7 114 82.5
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 8.6e-45 183.7 128 73.4
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 8.6e-45 183.7 122 74.6
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 8.6e-45 183.7 132 72.7
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.5e-44 183.0 130 72.3
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 1.9e-44 182.6 125 76.0
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 2.5e-44 182.2 130 71.5
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 2.5e-44 182.2 130 71.5
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.5e-44 182.2 127 72.4
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 2.5e-44 182.2 130 72.3
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 3.3e-44 181.8 132 70.5
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 3.3e-44 181.8 123 76.4
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 4.3e-44 181.4 124 73.4
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.6e-44 181.0 130 74.6
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 9.5e-44 180.3 129 73.6
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 1.2e-43 179.9 129 74.4
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 1.6e-43 179.5 121 74.4
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 2.1e-43 179.1 128 72.7
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 2.8e-43 178.7 121 74.4
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 2.8e-43 178.7 130 70.8
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 4.7e-43 177.9 122 72.1
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 6.2e-43 177.6 128 71.1
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 6.2e-43 177.6 127 73.2
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 1.1e-42 176.8 130 70.0
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.1e-42 176.8 127 73.2
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 1.4e-42 176.4 125 67.2
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.8e-42 176.0 122 73.0
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 1.8e-42 176.0 128 71.1
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 2.3e-42 175.6 127 73.2
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.3e-42 175.6 127 73.2
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 2.3e-42 175.6 119 73.9
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 3.1e-42 175.3 123 73.2
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 5.2e-42 174.5 125 71.2
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 6.8e-42 174.1 124 69.4
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 6.8e-42 174.1 127 72.4
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 1.5e-41 172.9 125 66.4
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 1.5e-41 172.9 137 66.4
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 2.0e-41 172.6 134 70.1
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 3.4e-41 171.8 110 74.5
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 3.4e-41 171.8 148 62.8
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 4.4e-41 171.4 124 68.5
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 9.8e-41 170.2 124 68.5
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 9.8e-41 170.2 141 66.0
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 1.3e-40 169.9 132 65.9
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 1.7e-40 169.5 126 63.5
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 2.9e-40 168.7 127 64.6
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 3.7e-40 168.3 125 65.6
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 3.7e-40 168.3 125 65.6
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 3.7e-40 168.3 125 65.6
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 3.7e-40 168.3 132 65.2
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 4.9e-40 167.9 134 64.2
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 4.9e-40 167.9 134 64.2
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 4.9e-40 167.9 130 68.5
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 4.9e-40 167.9 125 68.8
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 8.3e-40 167.2 125 68.8
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 1.1e-39 166.8 129 62.8
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 1.1e-39 166.8 105 71.4
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.1e-39 166.8 100 79.0
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.4e-39 166.4 116 68.1
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 1.4e-39 166.4 120 66.7
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.4e-39 166.4 126 66.7
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 1.4e-39 166.4 167 55.1
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 1.9e-39 166.0 123 70.7
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 2.4e-39 165.6 105 76.2
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 3.2e-39 165.2 123 65.0
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 3.2e-39 165.2 126 65.9
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 3.2e-39 165.2 112 69.6
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 4.1e-39 164.9 121 64.5
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 5.4e-39 164.5 129 62.0
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 1.2e-38 163.3 105 75.2
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.6e-38 162.9 102 73.5
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 7.8e-38 160.6 116 69.0
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 7.8e-38 160.6 121 65.3
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 1.7e-37 159.5 127 63.8
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 2.3e-37 159.1 132 64.4
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 3.9e-37 158.3 121 66.1
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 7.3e-36 154.1 105 75.2
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 7.3e-36 154.1 92 80.4
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 2.1e-35 152.5 164 53.7
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 8.1e-35 150.6 168 52.4
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.0e-33 146.0 152 55.9
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 4.4e-33 144.8 95 73.7
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 5.8e-33 144.4 117 59.8
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 3.7e-32 141.7 87 77.0
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 8.4e-32 140.6 97 74.2
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.9e-31 139.4 123 56.1
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 5.4e-31 137.9 134 54.5
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 7.1e-31 137.5 112 56.2
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.2e-30 136.7 115 56.5
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.6e-30 136.3 123 54.5
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 2.1e-30 136.0 114 55.3
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 2.3e-29 132.5 88 76.1
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 3.0e-29 132.1 121 59.5
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 1.5e-28 129.8 117 58.1
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 1.9e-28 129.4 106 58.5
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 4.3e-28 128.3 91 71.4
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 7.3e-28 127.5 129 51.9
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 2.4e-26 122.5 128 54.7
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 5.2e-26 121.3 83 71.1
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 8.9e-26 120.6 82 72.0
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.2e-25 120.2 128 54.7
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 2.2e-24 115.9 76 69.7
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 2.2e-24 115.9 78 69.2
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 2.9e-24 115.5 91 60.4
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 3.8e-24 115.2 63 82.5
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.9e-23 112.8 69 76.8
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 1.0e-21 107.1 102 50.0
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 3.9e-21 105.1 95 54.7
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 6.9e-18 94.4 96 44.8
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 2.2e-16 89.4 61 68.9
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 3.8e-16 88.6 52 78.8
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 3.2e-15 85.5 92 42.4
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 7.9e-14 80.9 114 42.1
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 1.3e-13 80.1 125 43.2
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.2e-08 62.8 62 56.5
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 8.4e-08 60.8 93 29.0
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 1.1e-07 60.5 48 66.7
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 6.0e-06 54.7 93 29.0


User provided reference genes

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