Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.1074 Acer truncatum HOM05D008427 ORTHO05D010551 3.3e-98 361.7 178 100.0
Atru.chr2.1085 Acer truncatum HOM05D008427 ORTHO05D010551 1.1e-74 283.5 183 78.7
Atru.chr2.1077 Acer truncatum HOM05D008427 ORTHO05D010551 7.8e-60 234.2 183 68.9
Atru.chr2.1095 Acer truncatum HOM05D008427 ORTHO05D010551 1.1e-21 107.5 131 47.3
Atru.chr2.1092 Acer truncatum HOM05D000886 ORTHO05D010551 1.0e-19 100.9 141 44.0
Atru.chr2.1081 Acer truncatum HOM05D008427 ORTHO05D010551 1.4e-16 90.5 135 37.8
Thecc.05G267100 Theobroma cacao HOM05D008427 ORTHO05D010551 1.4e-16 90.5 141 38.3
Thecc.05G267200 Theobroma cacao HOM05D008427 ORTHO05D010551 2.4e-16 89.7 135 37.8
Atru.chr2.1102 Acer truncatum HOM05D008427 ORTHO05D010551 3.1e-16 89.4 136 40.4
COL.COLO4_15532 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.3e-14 84.0 129 37.2
Prupe.4G202600 Prunus persica HOM05D008427 ORTHO05D010551 1.7e-14 83.6 132 36.4
Atru.chr2.1104 Acer truncatum HOM05D000886 ORTHO05D000525 5.0e-14 82.0 128 36.7
Sabra13G0045300 Salix brachista HOM05D000886 ORTHO05D000525 2.5e-13 79.7 130 37.7
FvH4_3g21850 Fragaria vesca HOM05D000886 ORTHO05D010551 2.7e-12 76.3 167 33.5
FAN11G0335 Fragaria x ananassa HOM05D000886 ORTHO05D010551 2.7e-12 76.3 167 33.5
Potri.013G049000 Populus trichocarpa HOM05D000886 ORTHO05D010551 3.6e-12 75.9 153 34.0
COL.COLO4_15529 Corchorus olitorius HOM05D008427 ORTHO05D010551 6.1e-12 75.1 156 30.8
Duzib128G1006 Durio zibethinus HOM05D000886 ORTHO05D000525 8.0e-12 74.7 129 35.7
Atru.chr2.1098 Acer truncatum HOM05D000886 ORTHO05D010551 6.7e-11 71.6 130 34.6
Ca_10270_v3 Cicer arietinum L. HOM05D000886 ORTHO05D000525 1.1e-10 70.9 153 34.0
SHI23918 Sapria himalayana HOM05D008427 ORTHO05D000525 1.1e-10 70.9 175 30.3
C03p03160 Brassica napus HOM05D008427 ORTHO05D010551 5.7e-10 68.6 130 30.8
COL.COLO4_15525 Corchorus olitorius HOM05D000886 ORTHO05D000525 5.7e-10 68.6 128 35.2
Sabra19G0033300 Salix brachista HOM05D008427 ORTHO05D010551 5.7e-10 68.6 184 29.9
COL.COLO4_03543 Corchorus olitorius HOM05D000886 ORTHO05D000525 7.4e-10 68.2 122 35.2
RcHm_v2.0_Chr5g0037631 Rosa chinensis HOM05D008427 ORTHO05D010551 7.4e-10 68.2 125 34.4
Peaxi162Scf00011g01434 Petunia axillaris HOM05D000886 ORTHO05D000525 9.7e-10 67.8 133 36.1
Phvul.007G212800 Phaseolus vulgaris HOM05D000886 ORTHO05D000525 9.7e-10 67.8 123 38.2
BraA01t04160Z Brassica rapa HOM05D008427 ORTHO05D010551 2.2e-09 66.6 148 29.1
Carub.0006s0533 Capsella rubella HOM05D008427 ORTHO05D010551 2.2e-09 66.6 134 31.3
BolC3t12861H Brassica oleracea HOM05D008427 ORTHO05D010551 2.8e-09 66.2 130 30.0
Potri.019G021900 Populus trichocarpa HOM05D008427 ORTHO05D010551 4.8e-09 65.5 184 28.8
TPR.G40213 Trifolium pratense HOM05D000886 ORTHO05D000525 4.8e-09 65.5 122 36.9
BcaC09g48194 Brassica carinata HOM05D008427 ORTHO05D010551 6.3e-09 65.1 148 28.4
BolC1t05289H Brassica oleracea HOM05D008427 ORTHO05D010551 6.3e-09 65.1 148 30.4
Rhsim04G0069800 Rhododendron simsii HOM05D000886 ORTHO05D000525 6.3e-09 65.1 123 37.4
A03p02740 Brassica napus HOM05D008427 ORTHO05D010551 8.2e-09 64.7 130 30.0
BraA03t09637Z Brassica rapa HOM05D008427 ORTHO05D010551 8.2e-09 64.7 130 30.0
Thhalv10021553m.g Eutrema salsugineum HOM05D008427 ORTHO05D010551 8.2e-09 64.7 126 31.0
Gohir.A11G245100 Gossypium hirsutum HOM05D000886 ORTHO05D000525 8.2e-09 64.7 133 34.6
AT5G06450 Arabidopsis thaliana HOM05D008427 ORTHO05D010551 1.4e-08 63.9 134 31.3
Sp3g10000 Schrenkiella parvula HOM05D008427 ORTHO05D010551 1.4e-08 63.9 128 30.5
AT3G11770 Arabidopsis thaliana HOM05D008427 ORTHO05D010551 1.8e-08 63.5 124 31.5
BcaB06g25585 Brassica carinata HOM05D008427 ORTHO05D010551 1.8e-08 63.5 126 31.7
C05p56140 Brassica napus HOM05D008427 ORTHO05D010551 2.4e-08 63.2 124 30.6
BolC5t34280H Brassica oleracea HOM05D008427 ORTHO05D010551 2.4e-08 63.2 124 30.6
Carub.0003s1111 Capsella rubella HOM05D008427 ORTHO05D010551 2.4e-08 63.2 124 30.6
Aa31sc52G270 Aethionema arabicum HOM05D008427 ORTHO05D010551 3.1e-08 62.8 147 29.3
AL3G23340 Arabidopsis lyrata HOM05D008427 ORTHO05D010551 3.1e-08 62.8 124 30.6
CARHR206740 Cardamine hirsuta HOM05D008427 ORTHO05D010551 3.1e-08 62.8 130 30.0
Dinv04815 Davidia involucrata HOM05D000886 ORTHO05D000525 3.1e-08 62.8 123 36.6
BcaC05g29332 Brassica carinata HOM05D008427 ORTHO05D010551 4.1e-08 62.4 124 30.6
A05p37570 Brassica napus HOM05D008427 ORTHO05D010551 4.1e-08 62.4 124 30.6
BcaB04g21117 Brassica carinata HOM05D008427 ORTHO05D010551 5.3e-08 62.0 128 28.9
BraA05t22555Z Brassica rapa HOM05D008427 ORTHO05D010551 5.3e-08 62.0 124 29.8
Aa31LG3G5270 Aethionema arabicum HOM05D008427 ORTHO05D010551 7.0e-08 61.6 128 32.8
AL6G16540 Arabidopsis lyrata HOM05D008427 ORTHO05D010551 7.0e-08 61.6 134 30.6
Rhsim04G0069600 Rhododendron simsii HOM05D000886 ORTHO05D000525 7.0e-08 61.6 124 35.5
Sp6g36410 Schrenkiella parvula HOM05D008427 ORTHO05D010551 7.0e-08 61.6 132 31.8
Atru.chr2.1072 Acer truncatum HOM05D008427 ORTHO05D010551 9.1e-08 61.2 105 35.2
CARHR086320 Cardamine hirsuta HOM05D008427 ORTHO05D010551 9.1e-08 61.2 128 29.7
Manes.08G161704 Manihot esculenta HOM05D000886 ORTHO05D000525 1.6e-07 60.5 119 37.0
Nitab4.5_0006171g0080 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.6e-07 60.5 118 35.6
THA.LOC104816634 Tarenaya hassleriana HOM05D008427 ORTHO05D010551 2.0e-07 60.1 133 30.8
Zm00001eb157800 Zea mays HOM05D000886 ORTHO05D000525 2.6e-07 59.7 122 32.8
Nn7g36495 Nelumbo nucifera HOM05D000886 ORTHO05D000525 4.5e-07 58.9 123 34.1
Nitab4.5_0000787g0060 Nicotiana tabacum HOM05D000886 ORTHO05D000525 4.5e-07 58.9 154 31.8
Nitab4.5_0000699g0130 Nicotiana tabacum HOM05D000886 ORTHO05D000525 5.9e-07 58.5 119 35.3
Pp3c2_23990 Physcomitrium patens HOM05D000886 ORTHO05D000525 7.7e-07 58.2 137 34.3
Rhsim04G0069900 Rhododendron simsii HOM05D000886 ORTHO05D000525 7.7e-07 58.2 107 37.4
ECA232G0102 Erigeron canadensis HOM05D000886 ORTHO05D000525 1.3e-06 57.4 110 37.3
Lj5g0012682 Lotus japonicus HOM05D000886 ORTHO05D000525 1.3e-06 57.4 122 32.0
Manes.08G161900 Manihot esculenta HOM05D000886 ORTHO05D000525 1.3e-06 57.4 96 40.6
Psat6g160280 Pisum sativum HOM05D000886 ORTHO05D000525 1.3e-06 57.4 149 33.6
THA.LOC104826796 Tarenaya hassleriana HOM05D008427 ORTHO05D010551 1.3e-06 57.4 130 29.2
Nitab4.5_0003544g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.7e-06 57.0 119 36.1
PGSC0003DMG400024888 Solanum tuberosum HOM05D000886 ORTHO05D000525 2.2e-06 56.6 127 33.9
TPR.G20610 Trifolium pratense HOM05D002442 ORTHO05D002670 2.2e-06 56.6 203 26.1
ClCG10G016300 Citrullus lanatus HOM05D000886 ORTHO05D000525 2.9e-06 56.2 117 32.5
Psat3g135440 Pisum sativum HOM05D000886 ORTHO05D000525 2.9e-06 56.2 132 31.8
Prupe.4G179100 Prunus persica HOM05D000886 ORTHO05D000525 2.9e-06 56.2 121 33.9
Ciclev10006543m.g Citrus clementina HOM05D000886 ORTHO05D000525 3.8e-06 55.8 114 32.5
Lj3g0008510 Lotus japonicus HOM05D000886 ORTHO05D000525 3.8e-06 55.8 138 32.6
Nitab4.5_0000296g0050 Nicotiana tabacum HOM05D000886 ORTHO05D000525 3.8e-06 55.8 113 38.1
Os01g0737600 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 5.0e-06 55.5 114 35.1
Sopen12g031440 Solanum pennellii HOM05D000886 ORTHO05D000525 5.0e-06 55.5 118 34.7
TPR.G1581 Trifolium pratense HOM05D000886 ORTHO05D000525 5.0e-06 55.5 118 32.2
Lsat_1_v5_gn_9_55780 Lactuca sativa HOM05D000886 ORTHO05D000525 6.5e-06 55.1 118 33.9
Os01g0737700 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 6.5e-06 55.1 114 34.2
Eucgr.B03763 Eucalyptus grandis HOM05D000886 ORTHO05D000525 8.5e-06 54.7 118 29.7


User provided reference genes

Program Settings