Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 1.5e-138 496.1 246 100.0
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 4.4e-138 494.6 246 99.6
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 2.9e-105 385.6 247 76.9
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 2.7e-103 379.0 221 79.6
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 7.9e-103 377.5 248 73.4
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 3.0e-102 375.6 227 77.1
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 5.1e-102 374.8 248 73.0
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 6.7e-102 374.4 249 73.1
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 2.0e-101 372.9 249 73.1
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 5.7e-101 371.3 249 74.7
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 7.4e-101 370.9 241 71.8
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 4.8e-100 368.2 250 72.8
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 8.2e-100 367.5 247 71.3
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 4.1e-99 365.2 229 74.7
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 6.9e-99 364.4 221 78.3
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 1.2e-98 363.6 254 69.7
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 2.6e-98 362.5 251 72.9
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 4.5e-98 361.7 221 77.4
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 1.0e-97 360.5 225 76.4
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 2.2e-97 359.4 249 70.3
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 3.8e-97 358.6 242 71.1
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.4e-96 356.7 230 73.9
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 2.5e-96 355.9 244 73.8
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 3.2e-96 355.5 240 70.4
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 9.4e-96 354.0 232 72.8
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 1.6e-95 353.2 229 73.4
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 2.7e-95 352.4 238 70.2
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 4.7e-95 351.7 227 73.6
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 6.1e-95 351.3 229 73.4
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 1.4e-94 350.1 227 71.8
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 2.3e-94 349.4 249 69.5
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 3.0e-94 349.0 249 69.5
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 3.9e-94 348.6 226 74.3
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 7.4e-93 344.4 230 71.7
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 9.7e-93 344.0 233 70.8
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 2.4e-91 339.3 249 66.3
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 1.6e-90 336.7 224 72.8
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 1.6e-90 336.7 240 67.9
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 3.5e-90 335.5 237 67.9
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 4.5e-90 335.1 230 69.1
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 5.9e-90 334.7 226 71.2
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 1.3e-89 333.6 232 69.8
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 3.8e-89 332.0 221 72.9
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 6.5e-89 331.3 232 70.3
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 6.5e-89 331.3 224 69.6
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 8.5e-89 330.9 232 67.7
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 3.2e-88 328.9 239 65.3
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 7.2e-88 327.8 241 67.2
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 7.2e-88 327.8 241 67.2
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 9.4e-88 327.4 240 67.1
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 9.4e-88 327.4 230 66.5
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 1.2e-87 327.0 244 67.6
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 2.7e-87 325.9 240 67.1
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 6.1e-87 324.7 228 68.0
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 8.0e-87 324.3 230 67.0
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 1.0e-86 323.9 241 66.0
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 3.0e-86 322.4 257 63.0
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 1.1e-85 320.5 221 69.7
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 1.1e-85 320.5 226 66.8
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 9.7e-85 317.4 237 64.1
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 1.3e-84 317.0 292 55.5
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 1.3e-84 317.0 250 61.6
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 3.7e-84 315.5 250 60.8
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 6.3e-84 314.7 247 65.2
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 6.3e-84 314.7 236 66.5
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 8.2e-84 314.3 251 62.9
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 8.2e-84 314.3 235 66.4
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.1e-83 313.9 237 63.7
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.1e-83 313.9 264 62.5
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 1.4e-83 313.5 252 61.9
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 1.4e-83 313.5 226 67.3
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 3.1e-83 312.4 251 62.9
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 3.1e-83 312.4 242 64.5
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 9.1e-83 310.8 251 61.8
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 1.6e-82 310.1 249 63.1
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 5.9e-82 308.1 238 61.8
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 5.9e-82 308.1 226 65.5
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 1.0e-81 307.4 219 66.7
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 1.0e-81 307.4 226 65.5
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 1.2e-79 300.4 222 68.0
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 2.7e-79 299.3 228 63.2
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 2.3e-78 296.2 212 68.4
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 8.8e-78 294.3 228 63.6
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 5.7e-77 291.6 246 59.8
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 4.1e-75 285.4 246 61.0
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 7.0e-75 284.6 245 58.0
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 9.1e-75 284.3 245 58.0
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 3.5e-74 282.3 224 60.7
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 5.9e-74 281.6 197 68.0
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 9.4e-72 274.2 218 65.6
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 1.2e-71 273.9 236 62.3
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 1.4e-70 270.4 195 67.2
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 2.6e-69 266.2 236 58.1
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 2.6e-69 266.2 236 58.1
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 4.4e-69 265.4 197 65.0
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 4.9e-68 261.9 264 53.8
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 1.1e-67 260.8 240 57.1
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 1.1e-67 260.8 197 63.5
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 2.4e-67 259.6 227 59.0
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 1.1e-64 250.8 236 55.5
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 1.0e-62 244.2 282 49.6
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 8.9e-62 241.1 183 61.2
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 1.2e-61 240.7 160 71.2
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 4.4e-61 238.8 173 67.1
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 7.3e-56 221.5 159 66.0
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 4.4e-53 212.2 241 52.7
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 1.7e-52 210.3 218 54.6
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 2.2e-52 209.9 143 66.4
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 2.7e-50 203.0 171 63.7
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 1.6e-47 193.7 121 75.2
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 5.8e-45 185.3 170 54.7
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 1.7e-44 183.7 124 68.5
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 5.1e-41 172.2 123 68.3
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 7.6e-37 158.3 150 54.0
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 2.9e-36 156.4 131 58.8
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 7.8e-34 148.3 213 36.2
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 1.7e-28 130.6 210 32.9
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 2.1e-23 113.6 100 51.0
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 1.8e-22 110.5 82 67.1
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 2.8e-15 86.7 61 60.7
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 2.4e-11 73.6 43 74.4
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 7.1e-11 72.0 95 43.2


User provided reference genes

Program Settings