Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 2358.9 1181 100.0
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1839.3 1172 78.2
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1634.4 1187 67.6
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1629.0 1399 61.2
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1629.0 1179 69.2
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1624.4 1178 69.4
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1620.5 1180 68.7
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1619.4 1178 68.9
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1613.6 1182 68.6
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1606.7 1183 69.8
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1595.5 1167 67.4
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1587.8 1177 68.6
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1583.9 1128 71.0
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1576.6 1176 67.1
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1576.2 1182 67.5
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1562.7 1207 64.4
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1561.2 1178 67.3
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1539.6 1177 66.4
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1536.9 1177 66.4
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1536.5 1178 65.8
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1523.8 1177 65.7
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1513.0 1197 64.4
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1510.4 1183 65.3
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1504.6 1176 62.7
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1503.8 1183 65.7
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1501.1 1167 64.9
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1496.5 1183 63.8
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1495.3 1195 63.6
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1484.2 1167 64.1
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1480.7 1177 64.7
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1478.8 1187 63.0
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1476.5 1174 61.8
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1460.7 1179 63.1
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1459.9 1169 63.6
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1457.2 1169 63.7
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1457.2 1168 63.8
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1457.2 1178 60.9
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1456.4 1177 61.6
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1453.0 1167 62.8
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1446.4 1176 60.8
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1444.1 1167 63.3
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1443.7 1168 63.3
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1443.3 1170 62.6
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1432.9 1168 62.7
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1432.9 1381 56.3
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1429.8 1182 61.3
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1427.9 1210 60.8
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1421.0 1174 59.8
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1415.6 1167 62.4
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1413.7 1169 61.9
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1407.5 1164 61.6
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1404.0 1037 69.0
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1400.2 1179 61.6
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1389.4 1178 58.7
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1384.0 1165 60.5
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1383.2 1175 60.0
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1372.1 1166 60.3
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1364.4 1180 58.4
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1363.2 1175 59.3
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1362.1 1175 59.1
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1361.7 1181 59.1
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1359.0 1173 59.8
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1353.6 1183 57.7
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1345.9 1209 58.0
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1340.9 1174 58.8
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1329.3 1175 57.9
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1327.4 1187 57.6
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1323.1 1175 59.0
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1318.1 1167 58.3
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1316.2 1178 57.2
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1313.1 1169 58.1
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1312.0 1054 61.9
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1308.1 1175 57.3
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1281.2 1058 60.6
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1265.8 1181 55.9
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1231.9 1176 54.2
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1225.7 1136 55.6
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1180.2 1183 52.7
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1179.9 1106 57.0
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 0.0e+00 1162.9 1211 51.2
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 0.0e+00 1144.0 1187 50.5
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 0.0e+00 1140.9 1120 53.7
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 0.0e+00 1123.6 1182 49.7
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1109.4 1162 52.0
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 0.0e+00 1101.3 1119 51.9
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 6.3e-307 1057.7 1177 47.7
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 5.0e-296 1021.5 760 68.0
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 5.0e-288 995.0 841 60.4
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 6.8e-269 931.4 716 67.5
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 4.0e-253 879.0 788 58.1
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 6.9e-245 851.7 1105 45.2
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 3.4e-228 796.2 763 55.3
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 1.6e-193 681.0 580 59.7
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 4.4e-191 672.9 1203 35.2
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 3.7e-166 590.1 1171 34.7
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 6.0e-164 582.8 440 66.4
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 2.3e-160 570.9 649 48.7
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 5.4e-157 559.7 465 59.8
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 1.2e-135 488.8 391 61.9
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 6.0e-132 476.5 1130 31.1
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 1.7e-126 458.4 835 34.9
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 8.4e-118 429.5 429 52.0
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 3.0e-107 394.4 528 40.2
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.2e-92 345.9 422 41.7
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 2.3e-91 341.7 287 60.3
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 5.5e-77 293.9 220 65.0
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 4.4e-74 284.3 204 68.6
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 1.3e-70 272.7 185 70.8
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 2.8e-65 255.0 176 74.4
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-57 228.8 1121 24.0
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 3.0e-54 218.4 305 42.0
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 6.8e-51 207.2 232 50.9
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 4.4e-42 177.9 123 71.5
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 2.2e-33 149.1 157 47.8
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 4.9e-33 147.9 324 31.8
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 1.2e-18 100.1 58 75.9
Cfa022114 Carpinus fangiana HOM05D005978 ORTHO05D007472 1.5e-18 99.8 484 22.9
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 1.5e-18 99.8 589 21.6
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 2.6e-18 99.0 535 23.4
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 6.4e-17 94.4 107 47.7
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 8.4e-17 94.0 53 77.4
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 1.3e-14 86.7 60 66.7
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 2.4e-11 75.9 78 50.0
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 6.9e-11 74.3 53 69.8
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 2.0e-10 72.8 114 41.2
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 2.2e-09 69.3 48 62.5
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 4.9e-09 68.2 48 62.5
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 9.3e-08 63.9 64 51.6
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 1.0e-06 60.5 59 52.5


User provided reference genes

Program Settings