Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 6.7e-143 510.8 275 100.0
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 6.7e-143 510.8 275 100.0
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.9e-114 415.6 274 82.5
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 3.2e-113 412.1 276 79.3
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 9.4e-113 410.6 276 81.5
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.6e-112 408.7 281 78.6
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 4.7e-112 408.3 277 79.1
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 1.0e-111 407.1 279 79.2
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.8e-111 406.4 273 79.1
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.0e-111 405.6 281 78.3
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 3.0e-111 405.6 281 78.3
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 3.0e-111 405.6 271 80.8
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.5e-110 403.3 273 79.5
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.4e-110 401.7 273 79.5
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 4.4e-110 401.7 276 78.3
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.3e-109 400.2 277 77.3
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.8e-109 399.1 265 81.9
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 3.7e-109 398.7 279 78.5
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 4.9e-109 398.3 283 77.4
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 6.3e-109 397.9 282 75.9
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 1.8e-108 396.4 273 77.7
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 2.4e-108 396.0 276 75.7
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 2.4e-108 396.0 277 78.0
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 5.4e-108 394.8 272 78.3
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 7.0e-108 394.4 281 77.2
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 7.0e-108 394.4 280 77.5
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 7.0e-108 394.4 276 77.5
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 9.1e-108 394.0 282 77.7
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.0e-107 392.9 278 77.3
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.7e-107 392.5 278 78.1
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 7.7e-107 391.0 278 73.7
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 7.7e-107 391.0 278 75.2
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 7.7e-107 391.0 278 77.7
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.3e-106 390.2 278 77.0
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 1.3e-106 390.2 279 76.0
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 2.9e-106 389.0 280 73.9
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 3.8e-106 388.7 276 76.8
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 3.8e-106 388.7 275 76.0
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 3.8e-106 388.7 273 76.6
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 3.8e-106 388.7 276 75.0
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 5.0e-106 388.3 278 77.0
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 6.6e-106 387.9 277 78.0
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 8.6e-106 387.5 276 75.7
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 8.6e-106 387.5 284 76.8
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 8.6e-106 387.5 280 73.9
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 1.1e-105 387.1 280 74.3
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 1.1e-105 387.1 280 74.3
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 1.5e-105 386.7 276 75.4
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 1.5e-105 386.7 278 76.6
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 1.5e-105 386.7 274 77.0
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 4.2e-105 385.2 277 79.4
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 4.2e-105 385.2 278 77.3
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 4.2e-105 385.2 281 74.7
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 7.2e-105 384.4 279 75.6
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.5e-105 384.0 279 75.3
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 1.2e-104 383.6 277 76.9
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.2e-104 383.6 276 74.6
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.6e-104 383.3 279 75.3
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 2.8e-104 382.5 277 76.9
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 4.7e-104 381.7 276 75.0
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.1e-104 381.3 279 74.6
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 6.1e-104 381.3 275 76.4
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 6.1e-104 381.3 272 75.4
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 8.0e-104 380.9 276 75.0
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.0e-103 380.6 277 76.2
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 1.0e-103 380.6 248 81.9
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 1.4e-103 380.2 276 76.4
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 1.8e-103 379.8 271 75.6
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 2.3e-103 379.4 277 76.2
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 2.3e-103 379.4 277 76.2
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 2.3e-103 379.4 277 76.2
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 2.3e-103 379.4 277 76.2
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 3.0e-103 379.0 275 76.4
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 3.0e-103 379.0 275 76.4
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 3.0e-103 379.0 273 72.9
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 4.0e-103 378.6 277 76.2
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 6.8e-103 377.9 277 76.2
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 6.8e-103 377.9 277 77.3
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 6.8e-103 377.9 277 77.3
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 8.9e-103 377.5 277 75.1
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.2e-102 377.1 272 77.2
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 1.2e-102 377.1 277 75.8
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 1.2e-102 377.1 277 75.8
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 1.5e-102 376.7 279 75.3
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 1.5e-102 376.7 276 74.3
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 2.0e-102 376.3 275 76.7
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 2.6e-102 375.9 273 76.9
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 5.7e-102 374.8 272 76.5
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 9.8e-102 374.0 277 75.5
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 9.8e-102 374.0 277 75.5
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 1.7e-101 373.2 279 74.9
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 1.7e-101 373.2 278 72.7
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 4.9e-101 371.7 277 75.1
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 4.9e-101 371.7 278 73.0
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 8.3e-101 370.9 276 74.6
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 8.3e-101 370.9 277 71.5
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 5.4e-100 368.2 278 74.5
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 5.4e-100 368.2 278 70.9
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.6e-99 366.7 274 74.1
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 1.3e-98 363.6 274 71.5
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.3e-98 362.8 248 77.8
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.9e-98 362.5 275 71.3
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 3.9e-98 362.1 278 71.9
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 1.1e-97 360.5 218 85.3
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 1.9e-97 359.8 235 80.0
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 2.1e-96 356.3 223 83.0
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 2.8e-96 355.9 277 71.5
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 3.6e-96 355.5 273 72.5
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 4.7e-96 355.1 278 72.3
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 1.4e-95 353.6 279 71.0
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.8e-95 353.2 244 75.8
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 5.2e-95 351.7 221 81.4
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 2.6e-94 349.4 271 73.1
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.3e-93 347.1 277 69.0
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.1e-92 344.0 199 85.9
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 7.8e-91 337.8 277 68.6
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 4.3e-89 332.0 264 68.6
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 1.6e-88 330.1 287 63.8
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 5.2e-87 325.1 194 82.5
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.6e-83 313.5 199 79.4
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 5.6e-81 305.1 216 72.2
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.3e-79 299.7 241 69.3
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.7e-75 286.2 171 83.6
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 6.2e-72 275.0 198 77.3
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 1.2e-67 260.8 162 86.4
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 5.3e-63 245.4 201 69.2
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 4.9e-61 238.8 198 73.7
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.9e-60 236.9 136 89.0
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 9.3e-60 234.6 162 71.0
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 2.6e-54 216.5 167 66.5
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 3.2e-52 209.5 275 52.0
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 9.6e-41 171.4 123 72.4
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 4.1e-39 166.0 234 51.7
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 5.3e-39 165.6 152 67.8
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 8.4e-37 158.3 98 79.6
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.1e-36 157.9 190 48.4
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 1.1e-36 157.9 190 48.4
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.2e-21 107.1 83 74.7
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 5.0e-21 105.9 111 55.9
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 5.2e-10 69.3 151 34.4
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 7.5e-09 65.5 183 29.0
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.8e-08 63.5 38 78.9
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 8.2e-08 62.0 79 53.2
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 1.2e-06 58.2 60 46.7


User provided reference genes

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