Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 4.4e-141 504.6 251 100.0
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 8.3e-116 420.6 253 81.4
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 6.0e-114 414.5 252 82.5
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 1.0e-113 413.7 258 80.2
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 6.6e-113 411.0 253 80.2
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 6.6e-113 411.0 251 82.5
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 8.6e-113 410.6 251 82.9
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 1.5e-112 409.8 253 81.8
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 4.3e-112 408.3 257 79.8
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.6e-111 406.4 244 82.0
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.1e-111 406.0 258 79.5
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.8e-111 405.6 258 80.2
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 3.6e-111 405.2 256 78.9
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 3.6e-111 405.2 254 81.1
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 8.1e-111 404.1 254 80.3
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 1.4e-110 403.3 247 79.8
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 4.0e-110 401.7 253 78.3
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 5.2e-110 401.4 247 81.8
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 1.5e-109 399.8 253 80.2
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 3.4e-109 398.7 254 78.0
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 3.4e-109 398.7 252 81.3
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 9.9e-109 397.1 250 80.8
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 9.9e-109 397.1 239 82.0
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.3e-108 396.7 251 81.3
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 2.9e-108 395.6 256 77.3
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 3.7e-108 395.2 253 78.7
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.4e-107 393.3 232 84.5
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 1.4e-107 393.3 247 77.7
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 3.2e-107 392.1 229 83.4
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 7.1e-107 391.0 260 75.8
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 1.2e-106 390.2 246 77.6
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 1.6e-106 389.8 248 77.8
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 2.1e-106 389.4 246 78.0
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.7e-105 386.3 255 77.3
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 8.6e-105 384.0 279 73.5
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 8.6e-105 384.0 238 79.4
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 8.6e-105 384.0 255 77.3
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 1.1e-104 383.6 252 76.6
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 3.3e-104 382.1 227 82.4
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 4.3e-104 381.7 243 76.5
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 4.3e-104 381.7 225 81.8
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 5.6e-104 381.3 243 79.4
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 4.7e-103 378.3 255 74.5
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.1e-102 377.1 249 75.9
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.4e-102 376.7 257 75.1
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 4.0e-102 375.2 268 73.1
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 6.8e-102 374.4 247 76.5
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 8.9e-102 374.0 246 77.2
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 2.0e-101 372.9 251 74.5
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 9.9e-101 370.5 253 75.9
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 9.9e-101 370.5 249 75.5
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 9.9e-101 370.5 248 74.6
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 2.9e-100 369.0 240 77.5
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 2.9e-100 369.0 246 75.2
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 4.9e-100 368.2 252 74.2
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 1.1e-99 367.1 250 74.0
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 1.1e-99 367.1 243 77.0
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 1.4e-99 366.7 241 74.7
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.4e-99 365.9 250 74.4
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.2e-99 365.5 252 73.0
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 3.2e-99 365.5 254 72.8
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 4.2e-99 365.2 229 76.9
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 7.1e-99 364.4 252 73.4
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 1.2e-98 363.6 248 73.4
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 1.6e-98 363.2 243 76.1
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 2.7e-98 362.5 251 74.9
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.7e-98 362.5 229 78.6
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 2.7e-98 362.5 252 73.0
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 6.0e-98 361.3 248 72.6
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.0e-97 360.5 252 73.0
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 3.0e-97 359.0 249 73.5
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 3.9e-97 358.6 237 73.0
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 6.6e-97 357.8 228 76.3
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 8.7e-97 357.5 250 74.4
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 1.9e-96 356.3 217 82.5
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.1e-95 352.8 250 72.8
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 6.2e-95 351.3 256 70.7
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 5.4e-91 338.2 199 83.9
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 7.1e-91 337.8 242 70.7
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 2.1e-90 336.3 237 69.6
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 1.0e-89 334.0 253 69.2
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 1.9e-88 329.7 244 68.0
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 7.3e-88 327.8 235 70.2
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 3.6e-87 325.5 247 67.2
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 8.1e-87 324.3 210 74.8
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 1.2e-85 320.5 236 68.6
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 3.4e-85 318.9 238 67.6
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 5.8e-85 318.2 238 68.1
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 5.8e-85 318.2 237 67.5
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 9.9e-85 317.4 235 69.4
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 3.8e-84 315.5 238 68.9
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 4.9e-84 315.1 236 69.5
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 8.4e-84 314.3 251 64.9
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 5.4e-83 311.6 202 76.2
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 9.3e-83 310.8 236 68.6
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 1.2e-82 310.5 235 67.7
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 3.5e-82 308.9 236 68.6
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 1.5e-80 303.5 246 66.3
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 3.4e-77 292.4 273 59.3
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 5.1e-73 278.5 185 74.6
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 5.7e-72 275.0 161 84.5
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 2.8e-71 272.7 171 80.1
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 1.1e-70 270.8 155 84.5
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 4.2e-67 258.8 140 85.0
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 1.6e-66 256.9 159 78.6
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 2.1e-66 256.5 171 77.2
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.5e-66 255.8 164 76.2
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.1e-62 244.2 246 56.1
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 3.1e-62 242.7 175 74.3
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 1.5e-61 240.4 205 61.0
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 5.5e-59 231.9 189 60.8
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 2.7e-58 229.6 255 52.2
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 4.2e-43 179.1 249 43.8
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 1.7e-39 167.2 103 79.6
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 5.0e-36 155.6 186 53.2
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 3.4e-32 142.9 93 76.3
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 2.7e-29 133.3 210 41.0
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 2.7e-29 133.3 72 83.3
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 8.5e-28 128.3 80 75.0
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 1.6e-26 124.0 74 78.4
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 2.0e-24 117.1 88 67.0
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 4.4e-24 115.9 157 48.4
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 1.1e-22 111.3 90 64.4
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 3.1e-22 109.8 85 61.2
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.6e-19 99.0 58 82.8
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.6e-18 97.4 198 38.9
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 1.5e-16 90.9 59 72.9
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 2.0e-16 90.5 146 37.0
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 7.5e-16 88.6 63 66.7
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.4e-14 84.3 229 34.1
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 8.6e-12 75.1 45 75.6
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 2.8e-10 70.1 54 66.7
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 3.6e-10 69.7 64 56.2
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 1.4e-06 57.8 61 55.7
C09p14660 Brassica napus HOM05D017738 ORTHO05D042708 3.2e-06 56.6 93 38.7
BolC9t54371H Brassica oleracea HOM05D017738 ORTHO05D042708 3.2e-06 56.6 93 38.7
GSVIVG01016925001 Vitis vinifera HOM05D000106 ORTHO05D000160 4.1e-06 56.2 39 59.0


User provided reference genes

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