Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 2163.3 1094 100.0
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 2135.5 1080 100.0
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1728.0 1097 80.1
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1692.9 1096 78.1
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1689.9 1095 78.0
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1680.2 1096 77.7
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1665.6 1098 77.0
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1663.3 1100 77.0
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1657.5 1098 76.3
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1653.3 1100 76.2
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1651.3 1100 76.4
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1646.7 1098 75.8
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1645.9 1098 76.6
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1635.5 1098 75.0
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1620.9 1101 74.5
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1620.1 1096 74.7
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1615.9 1096 74.9
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1614.0 1096 74.8
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1612.4 1096 74.7
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1612.0 1096 74.7
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1608.2 1101 74.3
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1608.2 1096 74.6
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1605.5 1096 74.3
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1603.6 1101 73.6
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1602.0 1096 74.4
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1600.1 1099 74.4
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1597.4 1103 73.4
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1585.1 1095 73.3
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1583.5 1099 73.3
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1558.9 1099 72.8
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1556.2 1099 71.7
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1547.7 1093 71.3
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1540.0 1096 72.4
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1536.9 1100 70.6
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1532.7 1094 70.7
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1525.8 1093 69.6
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1521.1 1097 70.5
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1516.5 1093 70.4
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1514.2 1096 70.1
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1513.8 1096 69.2
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1512.3 1094 70.7
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1510.7 1096 70.0
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1507.3 1094 70.0
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1504.6 1094 70.3
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1499.2 1094 70.1
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1498.0 1111 68.0
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1497.6 1097 69.0
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1496.9 1094 69.7
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1496.9 1094 70.1
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1496.9 1093 69.7
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1496.1 1101 68.8
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1493.0 1094 69.5
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1491.5 1093 69.7
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1485.7 1099 68.6
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1483.4 1101 68.4
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1482.6 1097 68.9
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1478.0 1095 68.7
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1475.7 1092 69.6
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1466.4 1101 66.8
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1461.4 1096 67.9
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1460.3 1101 66.9
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1459.1 1105 68.3
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1459.1 1096 67.3
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1447.6 1100 66.1
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1441.8 1094 68.7
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1432.9 1104 66.6
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1426.0 1094 66.5
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1424.5 1113 66.8
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1422.9 1101 65.5
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1421.8 1113 65.8
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1409.4 1099 66.3
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1402.1 1099 65.7
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1399.0 1099 65.6
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1395.6 1099 65.6
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1394.8 1099 65.9
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1391.7 1099 65.7
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1390.6 1101 65.2
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1390.6 1101 65.2
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1388.2 1100 65.1
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1387.5 1101 65.6
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1374.8 1098 64.6
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1365.9 1127 63.0
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1365.1 1092 63.3
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1363.2 1092 63.6
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1354.0 1095 64.6
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1324.7 963 68.3
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1313.9 1053 66.7
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1313.1 1093 62.5
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1306.2 1097 62.1
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1255.7 1111 58.5
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1213.0 867 71.9
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1209.1 1092 56.3
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1195.3 1273 52.3
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1178.7 1115 56.1
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1171.4 1096 59.7
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1152.5 1088 55.1
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1102.0 758 74.5
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1084.7 716 74.3
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 3.3e-294 1015.4 672 72.3
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 1.3e-285 986.9 1111 50.5
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 5.2e-271 938.3 1020 49.2
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 2.1e-219 766.9 1110 41.4
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 2.3e-218 763.5 1129 39.4
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 2.2e-213 746.9 1112 40.9
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 1.2e-211 741.1 812 51.6
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 4.5e-198 696.0 1091 38.2
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 3.5e-174 616.7 619 51.2
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 2.4e-143 514.2 358 75.4
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 5.6e-140 503.1 458 58.7
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 1.6e-131 474.9 1305 29.9
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 1.9e-87 328.6 303 56.4
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 5.5e-79 300.4 1210 27.0
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 1.0e-72 279.6 221 61.1
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 5.0e-72 277.3 1309 26.1
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 2.0e-68 265.4 196 74.0
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 5.5e-63 247.3 232 55.2
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 6.7e-61 240.4 143 74.1
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 3.3e-60 238.0 225 55.6
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 8.8e-53 213.4 167 71.3
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 2.4e-50 205.3 1085 25.6
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 1.8e-42 179.1 129 71.3
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 4.1e-42 177.9 147 68.7
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.7e-40 172.6 125 70.4
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 6.5e-40 170.6 139 67.6
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 1.5e-39 169.5 1208 24.1
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 2.1e-30 139.0 139 56.8


User provided reference genes

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