Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 1.3e-121 439.9 243 100.0
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 6.2e-76 288.1 224 71.4
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 3.2e-72 275.8 257 62.3
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 3.2e-72 275.8 264 61.0
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.6e-71 273.5 266 60.5
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 3.9e-70 268.9 232 65.1
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 5.1e-70 268.5 206 69.4
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 5.1e-70 268.5 268 59.0
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 5.1e-70 268.5 268 59.0
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 7.4e-69 264.6 271 63.5
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 2.2e-68 263.1 232 63.8
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 8.2e-68 261.2 216 69.0
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 1.1e-67 260.8 235 63.0
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 1.1e-67 260.8 272 57.7
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 1.8e-67 260.0 190 71.6
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 2.6e-66 256.1 228 61.8
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 5.9e-66 255.0 264 56.4
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 8.5e-65 251.1 216 66.2
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 8.5e-65 251.1 178 71.9
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 2.5e-64 249.6 215 65.6
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 3.2e-64 249.2 195 71.3
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 4.2e-64 248.8 214 65.4
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 9.4e-64 247.7 183 73.2
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 1.2e-63 247.3 216 65.7
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 2.1e-63 246.5 182 72.5
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 2.1e-63 246.5 258 56.6
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 2.7e-63 246.1 183 72.7
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.7e-63 246.1 216 65.3
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 2.7e-63 246.1 218 61.9
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 6.1e-63 245.0 196 69.4
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.0e-62 244.2 191 68.1
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 1.0e-62 244.2 229 59.8
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.4e-62 243.8 217 64.1
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.8e-62 243.4 260 58.1
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.3e-62 243.0 190 67.9
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.3e-62 243.0 219 61.6
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 3.0e-62 242.7 185 70.3
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 3.0e-62 242.7 255 58.0
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 3.0e-62 242.7 217 61.3
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 3.9e-62 242.3 185 70.3
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 6.7e-62 241.5 233 60.5
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 1.1e-61 240.7 215 64.2
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 1.1e-61 240.7 228 60.5
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 1.1e-61 240.7 230 60.0
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 1.1e-61 240.7 183 72.7
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.5e-61 240.4 225 59.1
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 2.0e-61 240.0 214 62.6
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 2.0e-61 240.0 213 62.4
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 2.5e-61 239.6 213 62.4
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 3.3e-61 239.2 260 55.0
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 4.3e-61 238.8 220 60.9
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 7.4e-61 238.0 216 62.0
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 9.7e-61 237.7 225 58.7
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 9.7e-61 237.7 229 59.8
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 1.3e-60 237.3 227 58.6
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.3e-60 237.3 222 59.5
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 1.7e-60 236.9 189 68.3
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 2.8e-60 236.1 214 62.1
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 3.7e-60 235.7 213 62.9
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 4.8e-60 235.3 217 60.8
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 4.8e-60 235.3 217 60.8
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 6.3e-60 235.0 215 62.8
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 1.1e-59 234.2 183 70.5
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 1.4e-59 233.8 216 62.5
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.4e-59 233.8 208 62.5
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.4e-59 233.8 208 62.5
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 1.8e-59 233.4 230 58.3
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 2.4e-59 233.0 222 57.2
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 5.3e-59 231.9 194 62.9
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.2e-58 230.7 208 62.0
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 2.0e-58 229.9 226 55.8
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 3.4e-58 229.2 223 57.0
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 4.5e-58 228.8 222 60.8
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.0e-57 227.6 191 64.4
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 1.3e-57 227.3 187 65.8
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.3e-57 227.3 238 55.9
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 1.7e-57 226.9 233 56.7
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 1.7e-57 226.9 208 62.5
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 5.0e-57 225.3 196 63.3
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 5.0e-57 225.3 182 64.8
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 6.5e-57 224.9 180 65.0
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.4e-56 223.8 206 60.2
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 2.5e-56 223.0 190 63.7
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 3.6e-55 219.2 224 54.9
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 4.7e-55 218.8 182 64.8
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.0e-54 217.6 191 63.9
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 1.5e-53 213.8 211 55.5
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 1.5e-53 213.8 239 50.2
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.6e-53 213.0 223 57.0
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 5.7e-53 211.8 227 53.7
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 9.7e-53 211.1 191 62.3
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 4.8e-52 208.8 220 54.1
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 1.1e-51 207.6 199 59.8
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 5.9e-50 201.8 187 58.8
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 7.7e-50 201.4 162 67.9
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 5.5e-48 195.3 179 63.7
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 9.4e-48 194.5 233 50.6
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 1.2e-47 194.1 195 56.9
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 8.0e-47 191.4 152 65.8
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 1.8e-46 190.3 224 51.3
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 5.2e-46 188.7 165 61.8
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.7e-44 183.7 236 50.0
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.8e-44 183.0 238 49.6
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 3.1e-43 179.5 201 51.2
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 1.2e-42 177.6 197 52.3
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 3.5e-42 176.0 154 66.2
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 3.5e-42 176.0 161 60.2
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.9e-40 170.2 179 50.8
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 1.4e-38 164.1 151 60.3
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 1.4e-38 164.1 151 60.3
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 3.0e-38 162.9 179 55.9
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 4.0e-38 162.5 179 53.1
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 8.8e-38 161.4 153 61.4
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 1.2e-37 161.0 179 55.9
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 1.3e-36 157.5 178 50.6
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.3e-36 157.5 178 50.6
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 1.7e-36 157.1 178 48.9
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.7e-36 157.1 179 52.0
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.3e-33 147.5 165 53.3
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 6.5e-33 145.2 183 43.7
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 2.8e-28 129.8 155 52.9
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.5e-26 122.9 97 64.9
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.7e-25 120.6 97 66.0
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.7e-17 94.0 74 63.5
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 2.5e-16 90.1 176 36.9
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 5.6e-16 89.0 68 70.6
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 1.4e-14 84.3 65 67.7
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 2.3e-14 83.6 44 90.9
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 3.1e-14 83.2 184 35.3
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 8.3e-12 75.1 48 77.1
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 4.1e-11 72.8 45 82.2
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 5.4e-11 72.4 57 68.4
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 4.6e-10 69.3 194 26.3
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 7.8e-10 68.6 36 91.7
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 5.0e-09 65.9 60 63.3
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 6.8e-06 55.5 33 75.8


User provided reference genes

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