Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 0.0e+00 1377.1 707 100.0
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 4.4e-263 911.4 686 70.7
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 5.2e-232 808.1 637 65.5
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 1.5e-231 806.6 648 66.0
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 4.4e-231 805.1 640 65.6
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 2.1e-228 796.2 660 63.2
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 6.0e-228 794.7 660 63.3
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 3.0e-227 792.3 640 64.8
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 5.6e-226 788.1 661 62.0
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 1.4e-224 783.5 640 63.9
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 3.1e-224 782.3 644 63.2
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 5.4e-221 771.5 726 59.5
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 8.1e-217 757.7 640 62.2
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 1.1e-216 757.3 662 61.8
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 3.8e-214 748.8 639 61.7
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 1.4e-213 746.9 631 60.9
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 3.2e-213 745.7 640 61.4
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 7.1e-213 744.6 639 60.1
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 2.1e-209 733.0 639 59.5
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 4.0e-208 728.8 567 66.3
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 1.6e-204 716.8 638 59.7
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 2.7e-204 716.1 636 58.8
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 7.9e-204 714.5 641 57.9
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 1.3e-203 713.8 639 59.6
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 3.0e-203 712.6 641 56.9
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 4.3e-202 708.8 643 58.3
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 7.4e-202 708.0 659 56.8
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 2.8e-201 706.1 752 54.8
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.8e-200 703.4 654 57.3
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 2.4e-200 703.0 641 56.3
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 2.5e-194 682.9 637 56.4
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 1.3e-193 680.6 639 55.1
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 6.2e-193 678.3 643 55.8
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 1.4e-192 677.2 645 56.0
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 3.1e-192 676.0 645 55.3
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 4.0e-192 675.6 642 55.8
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 1.7e-190 670.2 637 55.4
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 1.9e-189 666.8 639 54.3
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 5.5e-189 665.2 641 54.3
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 7.1e-189 664.8 638 54.2
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 1.6e-188 663.7 642 54.8
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 7.9e-188 661.4 644 53.1
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 7.9e-188 661.4 644 53.1
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 1.3e-187 660.6 642 54.8
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 3.0e-187 659.4 648 54.3
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 9.7e-186 654.4 656 53.4
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 2.2e-185 653.3 522 65.5
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 9.0e-184 647.9 636 55.0
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 4.5e-183 645.6 693 51.1
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 2.2e-182 643.3 642 53.6
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 3.2e-181 639.4 637 53.7
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 1.6e-180 637.1 693 50.2
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 5.7e-178 628.6 659 52.0
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 1.4e-176 624.0 640 51.2
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 2.6e-175 619.8 642 51.7
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 2.9e-174 616.3 639 52.6
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 5.0e-174 615.5 643 52.4
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.0e-170 603.6 640 50.9
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.0e-170 603.6 639 51.0
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 2.2e-169 600.1 645 52.2
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 2.8e-169 599.7 640 50.0
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 3.7e-169 599.4 620 51.3
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 1.4e-168 597.4 640 51.4
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.4e-165 587.4 507 60.9
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 2.5e-165 586.6 482 65.1
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 6.1e-164 582.0 640 49.8
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 1.4e-163 580.9 672 48.8
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 2.6e-162 576.6 633 49.4
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 3.3e-162 576.2 640 49.2
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 1.4e-160 570.9 644 48.8
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 1.8e-160 570.5 640 48.1
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 9.1e-160 568.2 640 48.9
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 1.7e-158 563.9 644 48.8
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 1.5e-157 560.8 646 49.8
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 1.5e-157 560.8 643 48.5
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 1.6e-156 557.4 645 48.4
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 2.1e-156 557.0 636 48.4
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 4.0e-155 552.7 642 47.4
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 5.2e-155 552.4 651 48.4
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 6.7e-155 552.0 639 48.2
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.1e-152 543.1 449 62.8
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 2.6e-146 523.5 642 42.8
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.4e-144 517.7 653 45.0
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.9e-141 507.3 637 46.5
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 7.2e-141 505.4 566 49.3
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 6.1e-140 502.3 679 44.2
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 8.9e-139 498.4 639 42.3
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 5.4e-136 489.2 862 36.8
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 3.8e-134 483.0 645 45.0
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 4.6e-127 459.5 434 56.7
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.7e-124 449.5 630 40.8
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.1e-123 448.4 630 43.8
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 1.8e-123 447.6 624 44.6
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 5.2e-123 446.0 689 39.9
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 8.9e-123 445.3 624 44.4
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 2.3e-115 420.6 381 57.5
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 3.7e-113 413.3 381 56.2
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 4.9e-113 412.9 363 57.6
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 2.7e-103 380.6 422 48.8
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 3.5e-95 353.6 319 55.5
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 6.0e-95 352.8 319 55.5
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.7e-94 351.3 302 60.6
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 2.3e-86 324.3 428 43.2
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.5e-82 311.6 370 48.1
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 2.6e-82 310.8 650 33.2
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 4.3e-77 293.5 650 32.6
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.3e-76 292.0 654 32.9
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.9e-73 280.0 372 42.2
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 4.2e-72 276.9 263 56.7
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 3.3e-69 267.3 321 48.0
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 3.6e-63 247.3 279 48.7
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 4.8e-52 210.3 262 50.8
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 4.2e-48 197.2 396 34.3
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 5.5e-48 196.8 226 50.4
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 2.8e-44 184.5 653 26.8
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 2.4e-43 181.4 215 45.1
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 9.1e-43 179.5 193 49.7
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 5.9e-42 176.8 635 27.4
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 8.5e-41 172.9 197 50.3
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 5.2e-38 163.7 126 60.3
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 8.8e-38 162.9 180 48.3
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.5e-37 162.2 127 62.2
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.7e-36 158.7 181 43.6
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 8.3e-36 156.4 241 40.2
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.2e-34 152.5 213 40.8
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.2e-32 144.1 214 37.9
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.5e-29 135.6 320 30.3
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 2.0e-21 108.6 82 64.6
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 4.9e-20 104.0 74 59.5
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 4.5e-18 97.4 74 63.5
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 1.0e-17 96.3 95 53.7
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 5.0e-17 94.0 95 52.6
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 1.2e-15 89.4 63 63.5
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 3.7e-12 77.8 58 63.8
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-11 75.5 142 29.6
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 2.4e-11 75.1 61 59.0
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.6e-10 72.4 54 70.4
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 6.2e-07 60.5 52 57.7


User provided reference genes

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