Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1356 Acer truncatum HOM05D005783 ORTHO05D007042 5.0e-69 264.2 125 100.0
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 1.7e-29 132.9 63 96.8
Glyma.03G164500 Glycine max HOM05D005783 ORTHO05D007042 1.9e-28 129.4 63 93.7
Thecc.06G145600 Theobroma cacao HOM05D005783 ORTHO05D007042 7.3e-28 127.5 63 92.1
Aqoxy3G02728 Aquilegia oxysepala HOM05D005783 ORTHO05D007042 9.5e-28 127.1 63 92.1
Ciclev10023246m.g Citrus clementina HOM05D005783 ORTHO05D007042 9.5e-28 127.1 63 92.1
Glyma.19G165900 Glycine max HOM05D005783 ORTHO05D007042 9.5e-28 127.1 63 90.5
Sed0003492 Sechium edule HOM05D005783 ORTHO05D007042 1.2e-27 126.7 63 92.1
TWI75G0260 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 1.2e-27 126.7 63 90.5
CSS0031432 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.1e-27 125.9 63 92.1
Gorai.010G167900 Gossypium raimondii HOM05D005783 ORTHO05D007042 2.1e-27 125.9 63 92.1
Sed0004262 Sechium edule HOM05D005783 ORTHO05D007042 2.1e-27 125.9 63 92.1
MELO3C012871.2 Cucumis melo HOM05D005783 ORTHO05D007042 3.6e-27 125.2 63 90.5
Nitab4.5_0006107g0020 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.6e-27 125.2 70 82.9
Os02g0618250 Oryza sativa ssp. japonica HOM05D005783 ORTHO05D007042 3.6e-27 125.2 63 88.9
HPP92_023430 Vanilla planifolia HOM05D005783 ORTHO05D007042 3.6e-27 125.2 63 92.1
Gohir.D06G144100 Gossypium hirsutum HOM05D005783 ORTHO05D007042 4.7e-27 124.8 63 90.5
Lsat_1_v5_gn_5_182900 Lactuca sativa HOM05D005783 ORTHO05D007042 4.7e-27 124.8 63 92.1
Lj1g0019785 Lotus japonicus HOM05D005783 ORTHO05D007042 4.7e-27 124.8 63 90.5
PSO210G0272 Papaver somniferum HOM05D005783 ORTHO05D007042 4.7e-27 124.8 63 92.1
PSO210G6011 Papaver somniferum HOM05D005783 ORTHO05D007042 4.7e-27 124.8 63 92.1
PSO386G0180 Papaver somniferum HOM05D005783 ORTHO05D007042 4.7e-27 124.8 63 92.1
PSO386G0258 Papaver somniferum HOM05D005783 ORTHO05D007042 4.7e-27 124.8 63 92.1
TWI18G0071 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 4.7e-27 124.8 63 90.5
CSS0015227 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 6.1e-27 124.4 63 88.9
Duzib235G0343 Durio zibethinus HOM05D005783 ORTHO05D007042 6.1e-27 124.4 63 88.9
arahy.Tifrunner.gnm1.ann1.3WZ992 Arachis hypogaea HOM05D005783 ORTHO05D007042 8.0e-27 124.0 63 88.9
arahy.Tifrunner.gnm1.ann1.EB1FDX Arachis hypogaea HOM05D005783 ORTHO05D007042 8.0e-27 124.0 63 88.9
arahy.Tifrunner.gnm1.ann1.P2X2DJ Arachis hypogaea HOM05D005783 ORTHO05D007042 8.0e-27 124.0 63 88.9
arahy.Tifrunner.gnm1.ann1.R5MBR2 Arachis hypogaea HOM05D005783 ORTHO05D007042 8.0e-27 124.0 63 88.9
Hund02922 Selenicereus undatus HOM05D005783 ORTHO05D007042 8.0e-27 124.0 63 88.9
CsaV3_3G022140 Cucumis sativus L. HOM05D005783 ORTHO05D007042 1.0e-26 123.6 63 88.9
TWI12G1387 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 1.0e-26 123.6 63 88.9
Lj4g0020381 Lotus japonicus HOM05D005783 ORTHO05D007042 1.4e-26 123.2 63 90.5
Nitab4.5_0007062g0060 Nicotiana tabacum HOM05D005783 ORTHO05D007042 1.4e-26 123.2 63 90.5
TAR633G0770 Trochodendron aralioides HOM05D005783 ORTHO05D007042 1.4e-26 123.2 63 88.9
GSVIVG01033693001 Vitis vinifera HOM05D005783 ORTHO05D007042 1.4e-26 123.2 63 88.9
Duzib160G0066 Durio zibethinus HOM05D005783 ORTHO05D007042 2.3e-26 122.5 63 88.9
Phvul.001G162100 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 2.3e-26 122.5 63 90.5
Solyc09g066500.4 Solanum lycopersicum HOM05D005783 ORTHO05D007042 2.3e-26 122.5 63 88.9
PGSC0003DMG400010293 Solanum tuberosum HOM05D005783 ORTHO05D007042 2.3e-26 122.5 63 88.9
THA.LOC104804047 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 2.3e-26 122.5 63 88.9
CAN.G1366.15 Capsicum annuum HOM05D005783 ORTHO05D007042 3.0e-26 122.1 63 88.9
CAN.G812.22 Capsicum annuum HOM05D005783 ORTHO05D007042 3.0e-26 122.1 63 88.9
Eucgr.A00909 Eucalyptus grandis HOM05D005783 ORTHO05D007042 3.0e-26 122.1 63 88.9
Lalb_Chr13g0299521 Lupinus albus HOM05D005783 ORTHO05D007042 3.0e-26 122.1 63 88.9
Nitab4.5_0000326g0120 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.0e-26 122.1 63 88.9
Nitab4.5_0005593g0040 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.0e-26 122.1 63 88.9
THA.LOC104814520 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 3.0e-26 122.1 63 87.3
Lalb_Chr07g0181091 Lupinus albus HOM05D005783 ORTHO05D007042 4.0e-26 121.7 63 88.9
Migut.N02211 Erythranthe guttata HOM05D005783 ORTHO05D007042 5.2e-26 121.3 63 88.9
Nn3g19695 Nelumbo nucifera HOM05D005783 ORTHO05D007042 5.2e-26 121.3 63 88.9
Rhsim01G0263700 Rhododendron simsii HOM05D005783 ORTHO05D007042 5.2e-26 121.3 63 87.3
PGSC0003DMG400025503 Solanum tuberosum HOM05D005783 ORTHO05D007042 5.2e-26 121.3 63 90.5
Cc08_g00200 Coffea canephora HOM05D005783 ORTHO05D007042 6.8e-26 120.9 63 90.5
Potri.002G036500 Populus trichocarpa HOM05D005783 ORTHO05D007042 6.8e-26 120.9 59 93.2
Hund09610 Selenicereus undatus HOM05D005783 ORTHO05D007042 6.8e-26 120.9 63 87.3
Lalb_Chr12g0200071 Lupinus albus HOM05D005783 ORTHO05D007042 8.9e-26 120.6 63 87.3
Manes.13G035600 Manihot esculenta HOM05D005783 ORTHO05D007042 8.9e-26 120.6 63 87.3
Medtr7g097110 Medicago truncatula HOM05D005783 ORTHO05D007042 8.9e-26 120.6 63 87.3
Lsat_1_v5_gn_9_10421 Lactuca sativa HOM05D005783 ORTHO05D007042 1.2e-25 120.2 63 87.3
Potri.005G226300 Populus trichocarpa HOM05D005783 ORTHO05D007042 1.2e-25 120.2 59 93.2
ECA247G3893 Erigeron canadensis HOM05D005783 ORTHO05D007042 2.0e-25 119.4 67 82.1
Manes.13G035400 Manihot esculenta HOM05D005783 ORTHO05D007042 2.6e-25 119.0 63 85.7
Phvul.007G033301 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 2.6e-25 119.0 59 93.2
Phvul.008G022975 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 2.6e-25 119.0 59 93.2
Actinidia09533 Actinidia chinensis HOM05D000063 ORTHO05D002147 3.4e-25 118.6 63 85.7
HanXRQChr09g0254261 Helianthus annuus HOM05D005783 ORTHO05D007042 3.4e-25 118.6 63 87.3
Peaxi162Scf00624g00036 Petunia axillaris HOM05D005783 ORTHO05D007042 3.4e-25 118.6 63 87.3
EL10As5g23481 Beta vulgaris HOM05D005783 ORTHO05D007042 4.4e-25 118.2 63 87.3
Gohir.A10G043300 Gossypium hirsutum HOM05D005783 ORTHO05D007042 5.8e-25 117.9 59 91.5
Gohir.D10G044500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 5.8e-25 117.9 59 91.5
Gorai.011G047500 Gossypium raimondii HOM05D005783 ORTHO05D007042 5.8e-25 117.9 59 91.5
CiPaw.04G187800 Carya illinoinensis HOM05D005783 ORTHO05D007042 7.5e-25 117.5 63 85.7
COL.COLO4_31022 Corchorus olitorius HOM05D005783 ORTHO05D007042 7.5e-25 117.5 59 89.8
ClCG07G001140 Citrullus lanatus HOM05D005783 ORTHO05D007042 9.8e-25 117.1 60 88.3
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 2.2e-24 115.9 63 85.7
Cfa013045 Carpinus fangiana HOM05D005783 ORTHO05D007042 2.2e-24 115.9 63 85.7
Gohir.A06G139500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 2.9e-24 115.5 63 85.7
CDE03G0454 Ceratophyllum demersum HOM05D005783 ORTHO05D007042 3.7e-24 115.2 59 91.5
PGR031G0633 Punica granatum HOM05D005783 ORTHO05D007042 4.9e-24 114.8 59 89.8
FvH4_2g21220 Fragaria vesca HOM05D005783 ORTHO05D007042 6.4e-24 114.4 59 88.1
FAN20G2131 Fragaria x ananassa HOM05D005783 ORTHO05D007042 6.4e-24 114.4 59 88.1
MBI07_g16905_MAGBIO Magnolia biondii HOM05D005783 ORTHO05D007042 6.4e-24 114.4 59 88.1
RcHm_v2.0_Chr6g0287721 Rosa chinensis HOM05D005783 ORTHO05D007042 6.4e-24 114.4 59 88.1
CANSAT01G1988 Cannabis sativa HOM05D005783 ORTHO05D007042 1.1e-23 113.6 63 82.5
SalBow6G4406 Salvia bowleyana HOM05D005783 ORTHO05D007042 1.1e-23 113.6 85 68.2
unitig_60.g25746 Utricularia gibba HOM05D005783 ORTHO05D007042 3.2e-23 112.1 81 69.1
Prupe.8G221500 Prunus persica HOM05D005783 ORTHO05D007042 4.1e-23 111.7 59 84.7
AL3G53490 Arabidopsis lyrata HOM05D005783 ORTHO05D007042 5.4e-23 111.3 63 82.5
Carub.0003s3493 Capsella rubella HOM05D005783 ORTHO05D007042 1.6e-22 109.8 63 81.0
CARHR111040 Cardamine hirsuta HOM05D005783 ORTHO05D007042 1.6e-22 109.8 63 81.0
Medtr8g069770 Medicago truncatula HOM05D005783 ORTHO05D007042 1.6e-22 109.8 63 82.5
AT2G20490 Arabidopsis thaliana HOM05D005783 ORTHO05D007042 2.7e-22 109.0 58 86.2
Sp3g33690 Schrenkiella parvula HOM05D005783 ORTHO05D007042 2.7e-22 109.0 58 86.2
MD10G1181400 Malus domestica HOM05D005783 ORTHO05D007042 4.6e-22 108.2 59 83.1
Haze_21406 Corylus avellana HOM05D005783 ORTHO05D007042 6.0e-22 107.8 78 70.5
MD05G1194800 Malus domestica HOM05D005783 ORTHO05D007042 6.0e-22 107.8 59 83.1
A07p00260 Brassica napus HOM05D005783 ORTHO05D007042 7.8e-22 107.5 58 84.5
BraA07t27818Z Brassica rapa HOM05D005783 ORTHO05D007042 7.8e-22 107.5 58 84.5
Thhalv10002146m.g Eutrema salsugineum HOM05D005783 ORTHO05D007042 7.8e-22 107.5 63 79.4
BcaC07g41214 Brassica carinata HOM05D005783 ORTHO05D007042 1.3e-21 106.7 58 84.5
A09p58870 Brassica napus HOM05D005783 ORTHO05D007042 1.3e-21 106.7 58 84.5
C08p42200 Brassica napus HOM05D005783 ORTHO05D007042 1.3e-21 106.7 58 84.5
BolC8t51779H Brassica oleracea HOM05D005783 ORTHO05D007042 1.3e-21 106.7 58 84.5
BraA09t41273Z Brassica rapa HOM05D005783 ORTHO05D007042 1.3e-21 106.7 58 84.5
SEGI_26494 Sequoiadendron giganteum HOM05D005783 ORTHO05D007042 2.3e-21 105.9 63 76.2
BcaC06g36737 Brassica carinata HOM05D005783 ORTHO05D007042 3.9e-21 105.1 58 82.8
C07p00540 Brassica napus HOM05D005783 ORTHO05D007042 3.9e-21 105.1 58 82.8
BcaB08g34911 Brassica carinata HOM05D005783 ORTHO05D007042 8.6e-21 104.0 58 82.8
BcaC04g22786 Brassica carinata HOM05D005783 ORTHO05D007042 8.6e-21 104.0 58 82.8
A09p12910 Brassica napus HOM05D005783 ORTHO05D007042 8.6e-21 104.0 58 82.8
C09p15300 Brassica napus HOM05D005783 ORTHO05D007042 8.6e-21 104.0 58 82.8
BraA09t36936Z Brassica rapa HOM05D005783 ORTHO05D007042 8.6e-21 104.0 58 82.8
BcaB03g16843 Brassica carinata HOM05D005783 ORTHO05D007042 1.1e-20 103.6 58 81.0
SMO133G0019 Selaginella moellendorffii HOM05D005783 ORTHO05D007042 1.9e-20 102.8 60 75.0
Mapoly0081s0079 Marchantia polymorpha HOM05D005783 ORTHO05D007042 2.5e-20 102.4 61 73.8
FAN15G2862 Fragaria x ananassa HOM05D005783 ORTHO05D007042 4.3e-20 101.7 81 64.2
MCO03G241 Micromonas commoda HOM05D005783 ORTHO05D007042 1.2e-19 100.1 63 68.3
SalBow6G1359 Salvia bowleyana HOM05D005783 ORTHO05D007042 4.7e-19 98.2 114 50.9
FAN27G1156 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.1e-18 97.1 93 55.9
Pp3c19_4700 Physcomitrium patens HOM05D005783 ORTHO05D007042 1.1e-18 97.1 60 71.7
Cre05.g237700 Chlamydomonas reinhardtii HOM05D005783 ORTHO05D007042 3.1e-18 95.5 63 66.7
BolC7t40500H Brassica oleracea HOM05D005783 ORTHO05D007042 5.2e-18 94.7 71 66.2
PRCOL_00002782 Prasinoderma coloniale HOM05D005783 ORTHO05D007042 7.5e-17 90.9 62 66.1
BolC9t54438H Brassica oleracea HOM05D005783 ORTHO05D007042 2.9e-16 89.0 86 55.8
HanXRQChr10g0280801 Helianthus annuus HOM05D005783 ORTHO05D007042 1.1e-15 87.0 45 86.7
MELO3C033129.2 Cucumis melo HOM05D005783 ORTHO05D007042 1.6e-14 83.2 57 71.9
Sabra05G0174700 Salix brachista HOM05D005783 ORTHO05D007042 2.7e-14 82.4 42 88.1
Phvul.011G076600 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 1.0e-13 80.5 41 90.2
Duzib192G0414 Durio zibethinus HOM05D005783 ORTHO05D007042 1.9e-12 76.3 89 51.7
CSS0014186 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.4e-10 70.1 61 60.7
CAN.G304.1 Capsicum annuum HOM05D005783 ORTHO05D007042 1.8e-10 69.7 63 54.0
CSS0019928 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 5.2e-10 68.2 66 51.5
unitig_0.g159 Utricularia gibba HOM05D005783 ORTHO05D007042 1.2e-09 67.0 48 60.4
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 1.7e-08 63.2 37 78.4
BcaC03g16291 Brassica carinata HOM05D005783 ORTHO05D007042 2.2e-08 62.8 40 75.0
FAN24G2571 Fragaria x ananassa HOM05D005783 ORTHO05D007042 6.0e-06 54.7 27 92.6


User provided reference genes

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