Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 8.3e-171 603.6 300 100.0
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 1.5e-148 529.6 299 85.3
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 5.4e-146 521.2 300 85.0
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 3.5e-145 518.5 300 85.7
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 4.3e-143 511.5 300 82.3
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 4.3e-143 511.5 292 84.6
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 4.7e-142 508.1 300 83.0
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 6.8e-141 504.2 300 82.3
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 1.2e-140 503.4 300 82.7
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 2.0e-140 502.7 300 80.7
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 2.6e-140 502.3 293 82.3
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 2.6e-140 502.3 300 82.7
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 3.4e-140 501.9 300 82.0
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 4.4e-140 501.5 300 81.3
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 1.3e-139 500.0 299 80.6
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 4.9e-139 498.0 301 80.4
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 6.4e-139 497.7 293 81.6
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 8.4e-139 497.3 292 82.5
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.1e-138 496.9 302 82.5
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 1.1e-138 496.9 301 82.4
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 1.4e-138 496.5 311 80.1
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 1.4e-138 496.5 304 81.2
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 2.4e-138 495.7 303 80.2
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 7.1e-138 494.2 300 81.3
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 9.3e-138 493.8 300 81.3
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.2e-137 493.4 301 81.4
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.2e-137 493.4 292 81.8
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 1.6e-137 493.0 302 80.5
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 2.1e-137 492.7 293 81.9
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 2.7e-137 492.3 300 80.7
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 2.7e-137 492.3 292 81.2
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 4.6e-137 491.5 292 80.8
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 6.0e-137 491.1 294 79.6
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 7.8e-137 490.7 300 80.3
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 1.3e-136 490.0 300 81.3
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 1.3e-136 490.0 300 79.7
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 2.3e-136 489.2 292 80.1
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 3.0e-136 488.8 323 74.6
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 3.0e-136 488.8 292 80.5
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 6.6e-136 487.6 294 80.6
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 8.7e-136 487.3 292 80.1
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 1.1e-135 486.9 292 80.5
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 1.5e-135 486.5 300 78.3
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 1.9e-135 486.1 292 79.5
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 1.9e-135 486.1 300 79.3
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 3.3e-135 485.3 300 79.3
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 4.3e-135 485.0 301 78.7
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 7.3e-135 484.2 300 77.7
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 2.1e-134 482.6 292 79.8
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 2.1e-134 482.6 300 79.7
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 2.8e-134 482.3 300 77.0
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 2.8e-134 482.3 293 78.5
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 4.8e-134 481.5 294 77.9
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 2.4e-133 479.2 301 78.7
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 2.4e-133 479.2 330 72.7
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 6.9e-133 477.6 300 77.3
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 1.2e-132 476.9 281 83.3
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 1.5e-132 476.5 302 79.5
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 2.6e-132 475.7 302 77.2
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 5.8e-132 474.6 300 78.3
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 9.9e-132 473.8 293 77.8
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 1.7e-131 473.0 299 76.9
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 2.2e-131 472.6 293 77.8
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 2.2e-131 472.6 293 77.8
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 2.2e-131 472.6 293 77.8
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 2.2e-131 472.6 293 77.5
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 3.8e-131 471.9 301 77.1
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 3.8e-131 471.9 293 77.1
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 4.9e-131 471.5 301 77.1
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 4.9e-131 471.5 300 78.0
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 4.2e-130 468.4 291 78.0
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 2.7e-129 465.7 300 77.3
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 1.0e-128 463.8 300 76.0
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 2.3e-128 462.6 327 71.6
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 5.1e-128 461.5 284 79.9
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 1.1e-127 460.3 291 75.3
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 2.5e-127 459.1 300 74.3
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 2.5e-127 459.1 291 76.3
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 4.8e-126 454.9 291 76.3
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 5.3e-125 451.4 300 73.0
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.4e-122 443.4 309 71.2
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 2.4e-122 442.6 296 69.9
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 1.2e-121 440.3 270 80.7
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 4.6e-121 438.3 280 78.6
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 2.5e-119 432.6 300 74.0
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 4.3e-119 431.8 268 79.9
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.3e-118 430.3 297 73.1
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 4.8e-118 428.3 241 85.5
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 6.2e-118 427.9 251 81.7
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 1.7e-115 419.9 291 70.8
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 1.1e-114 417.2 288 69.4
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 5.1e-112 408.3 239 82.4
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 1.1e-109 400.6 241 79.3
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 4.1e-109 398.7 267 70.0
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 4.5e-108 395.2 222 86.5
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.9e-107 392.5 247 78.1
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 2.1e-97 359.8 240 73.3
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 6.5e-91 338.2 291 57.4
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 7.2e-90 334.7 288 58.3
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 2.3e-88 329.7 287 56.1
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 5.3e-85 318.5 208 75.0
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 4.5e-84 315.5 405 46.4
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 2.9e-83 312.8 282 62.4
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 6.1e-65 251.9 258 58.5
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 1.8e-64 250.4 280 50.0
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 5.6e-58 228.8 153 75.8
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 5.7e-55 218.8 291 39.5
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 5.7e-55 218.8 223 49.3
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 8.3e-54 214.9 124 82.3
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 1.6e-49 200.7 117 75.2
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 1.5e-47 194.1 190 54.2
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 5.4e-45 185.7 226 50.0
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 4.4e-39 166.0 178 52.8
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 7.8e-36 155.2 234 39.3
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 1.9e-34 150.6 111 65.8
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 1.2e-25 121.3 82 70.7
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 2.8e-25 120.2 75 77.3
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 1.1e-18 98.2 52 86.5
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 4.8e-17 92.8 48 81.2
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 1.1e-16 91.7 60 73.3
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.2e-15 88.2 55 74.5
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 1.7e-14 84.3 54 72.2
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 3.8e-14 83.2 54 72.2
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 1.1e-13 81.6 157 36.3
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 4.2e-13 79.7 147 38.8
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 3.5e-12 76.6 205 31.2
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 7.9e-12 75.5 59 66.1
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 2.0e-07 60.8 173 31.2
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 9.9e-07 58.5 165 27.9
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 9.9e-07 58.5 169 26.0
Potri.010G239500 Populus trichocarpa HOM05D005598 ORTHO05D006587 9.9e-07 58.5 59 54.2
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 1.3e-06 58.2 206 29.1
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.9e-06 57.0 42 71.4
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 3.8e-06 56.6 81 43.2
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 3.8e-06 56.6 26 88.5
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 6.4e-06 55.8 42 66.7


User provided reference genes

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