Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 0.0e+00 1125.5 670 100.0
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 5.1e-253 877.9 611 76.9
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 5.1e-253 877.9 653 73.5
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 8.1e-251 870.5 652 77.9
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.7e-248 862.8 669 73.4
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 3.2e-247 858.6 654 74.5
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 3.5e-246 855.1 623 75.1
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 4.6e-246 854.7 669 76.1
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.3e-245 853.2 674 74.8
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 2.3e-245 852.4 674 74.9
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.3e-244 848.6 653 74.3
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 4.3e-244 848.2 669 73.4
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 5.6e-244 847.8 669 75.6
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 4.9e-240 834.7 613 73.7
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 4.9e-240 834.7 632 73.9
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 8.4e-240 833.9 612 73.7
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.1e-239 833.6 631 74.0
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 1.9e-239 832.8 685 67.9
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 2.5e-239 832.4 629 70.4
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 3.2e-239 832.0 620 74.7
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.3e-235 820.1 675 69.5
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.6e-235 819.7 653 71.4
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 4.8e-235 818.1 631 69.7
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 8.2e-235 817.4 675 69.6
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 2.4e-234 815.8 636 77.0
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.4e-234 815.8 674 66.8
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 6.9e-234 814.3 655 71.9
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.2e-233 813.5 671 70.5
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.4e-233 812.0 635 69.0
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.6e-233 810.8 674 66.5
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.3e-232 810.1 635 68.8
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 1.7e-232 809.7 653 70.3
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 2.2e-232 809.3 671 71.8
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 5.0e-232 808.1 627 73.2
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 6.5e-232 807.7 622 71.9
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 5.5e-231 804.7 672 69.2
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 7.1e-231 804.3 672 71.1
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 3.5e-230 802.0 652 67.5
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.3e-229 800.0 675 68.6
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.3e-229 799.3 613 69.8
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.1e-228 797.0 711 64.1
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 5.7e-228 794.7 668 66.9
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 9.7e-228 793.9 613 69.5
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 3.7e-227 792.0 606 70.3
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.4e-226 790.0 612 67.8
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 4.1e-226 788.5 672 69.8
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.0e-225 786.2 629 68.0
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 2.0e-225 786.2 672 69.6
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 3.4e-225 785.4 648 67.4
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 7.7e-225 784.3 633 66.7
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 7.7e-225 784.3 673 68.8
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 7.7e-225 784.3 673 68.8
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.9e-224 782.3 673 68.5
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 5.0e-224 781.6 637 66.4
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 6.5e-224 781.2 653 67.4
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 8.5e-224 780.8 612 67.6
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 1.1e-223 780.4 608 68.6
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.1e-223 780.4 630 70.3
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.1e-223 780.4 673 68.5
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.1e-223 780.4 611 71.8
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.1e-223 780.4 652 69.0
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 2.5e-223 779.2 638 66.8
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 2.5e-223 779.2 638 66.8
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 2.5e-223 779.2 638 66.8
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 2.5e-223 779.2 653 65.7
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 4.2e-223 778.5 735 63.3
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 5.5e-223 778.1 613 68.5
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 7.2e-223 777.7 653 66.2
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 7.2e-223 777.7 669 68.2
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 2.1e-222 776.2 633 66.8
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 4.6e-222 775.0 653 65.1
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 4.6e-222 775.0 696 65.9
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 6.1e-222 774.6 672 64.1
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 7.9e-222 774.2 673 68.2
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 2.3e-221 772.7 673 64.5
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.0e-221 772.3 654 68.8
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 2.0e-220 769.6 656 64.5
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 7.4e-220 767.7 653 65.1
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 9.7e-220 767.3 641 65.4
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.7e-219 766.5 673 65.2
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.7e-219 766.5 612 68.8
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 9.1e-218 760.8 634 65.6
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 2.0e-217 759.6 625 66.4
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 7.7e-217 757.7 631 65.8
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.0e-216 757.3 670 63.1
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 5.5e-215 751.5 630 65.1
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 2.7e-214 749.2 681 61.5
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.0e-213 745.7 674 63.9
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.1e-212 743.8 677 64.7
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 2.8e-211 739.2 631 64.7
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.7e-211 738.8 622 65.6
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.1e-207 727.2 676 63.2
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 4.7e-206 721.8 677 63.7
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 1.0e-205 720.7 575 69.2
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.4e-205 720.3 639 62.6
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 3.0e-205 719.2 605 66.9
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 3.3e-204 715.7 634 63.4
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 7.7e-201 704.5 659 62.1
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 7.7e-201 704.5 541 66.4
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.0e-200 704.1 534 71.7
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.3e-200 703.7 574 69.5
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 3.8e-200 702.2 632 63.3
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.2e-198 697.2 685 62.6
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.2e-197 691.8 504 73.2
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 4.4e-196 688.7 653 59.1
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 2.1e-190 669.8 606 62.5
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 3.0e-189 666.0 675 60.0
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 8.8e-189 664.5 553 70.5
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.2e-185 654.1 637 60.4
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.7e-185 651.4 618 60.4
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 9.5e-183 644.4 679 56.8
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 2.4e-178 629.8 505 72.1
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.3e-176 623.2 622 58.5
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 7.3e-175 618.2 512 66.8
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 3.6e-174 615.9 500 71.0
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 3.1e-173 612.8 611 57.0
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 9.2e-162 574.7 609 55.0
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.7e-161 573.2 464 65.9
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 4.0e-157 559.3 463 71.7
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 3.2e-154 549.7 455 71.9
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.5e-143 514.2 454 68.9
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 7.6e-140 501.9 627 45.5
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 1.4e-138 497.7 630 50.0
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.6e-137 494.2 448 60.5
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 2.5e-135 486.9 511 56.9
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 9.9e-132 474.9 625 44.2
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.2e-129 468.0 555 49.4
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 1.2e-124 451.4 334 76.3
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 1.4e-117 427.9 386 61.9
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 1.3e-112 411.4 591 44.3
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 5.3e-109 399.4 415 54.7
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.2e-107 394.0 337 66.5
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 2.7e-105 387.1 651 39.8
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.6e-84 318.2 306 64.1
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.3e-70 271.9 224 63.4
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 4.9e-70 270.0 190 73.7
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 4.7e-65 253.4 642 32.9
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 1.7e-62 245.0 208 62.0
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 1.6e-60 238.4 168 76.8
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 2.7e-60 237.7 325 49.2
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 3.3e-58 230.7 206 59.7
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.6e-57 227.3 183 65.6
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 8.9e-56 222.6 166 72.3
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 9.2e-53 212.6 188 60.6
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 1.6e-52 211.8 707 30.4
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 3.4e-47 194.1 642 31.0
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 7.5e-47 193.0 155 63.9
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 7.5e-47 193.0 158 63.3
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 1.1e-45 189.1 155 63.2
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.0e-44 183.3 211 52.6
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 7.8e-44 183.0 158 60.1
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.1e-42 179.1 127 73.2
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 9.9e-39 166.0 117 72.6
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.2e-38 164.9 136 69.1
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.3e-35 155.6 148 60.1
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 2.9e-30 137.9 149 54.4
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 1.1e-29 136.0 191 42.4
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 7.8e-28 129.8 92 73.9
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 2.3e-27 128.3 92 71.7
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 2.3e-27 128.3 92 71.7
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 2.3e-27 128.3 92 71.7
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 1.2e-23 115.9 90 63.3
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 8.4e-22 109.8 98 61.2
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 9.3e-21 106.3 90 64.4
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 4.3e-18 97.4 97 51.5
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.1e-17 95.1 131 48.9
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 2.8e-17 94.7 64 73.4
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 2.8e-17 94.7 102 52.9
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.8e-17 94.7 94 52.1
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 3.6e-17 94.4 94 51.1
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 9.0e-16 89.7 93 46.2
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 7.6e-15 86.7 58 74.1
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 8.4e-14 83.2 51 76.5
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 6.0e-12 77.0 82 47.6
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 1.8e-11 75.5 72 48.6
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 8.7e-11 73.2 49 67.3
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 3.7e-09 67.8 628 23.2
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 3.1e-08 64.7 48 70.8
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.9e-06 58.2 166 32.5


User provided reference genes

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