Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 0.0e+00 1526.5 945 100.0
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 2.6e-279 965.7 953 70.9
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 2.4e-248 862.8 970 62.3
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.6e-239 833.6 964 63.8
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 3.7e-233 812.4 964 64.1
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.5e-229 799.7 886 66.7
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 4.7e-228 795.4 969 61.8
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 5.2e-227 792.0 885 63.2
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 3.8e-222 775.8 967 62.6
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 1.7e-217 760.4 831 66.2
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.8e-216 756.9 1012 58.8
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 3.5e-215 752.7 780 69.1
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 5.9e-215 751.9 981 60.9
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.0e-214 751.1 796 66.8
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 1.3e-214 750.7 1007 59.3
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 2.3e-211 740.0 1004 58.5
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 4.0e-211 739.2 1080 55.6
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 2.4e-208 729.9 787 67.6
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 1.0e-206 724.5 909 62.4
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 3.0e-206 723.0 960 58.0
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 8.6e-206 721.5 957 61.8
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 1.1e-205 721.1 994 59.2
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.9e-205 720.3 797 63.4
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 2.5e-205 719.9 959 51.9
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 1.6e-204 717.2 892 61.4
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.6e-204 716.1 960 58.0
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 6.2e-204 715.3 1000 56.5
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.9e-201 706.4 962 57.5
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 2.1e-199 700.3 964 59.2
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.3e-198 696.8 966 59.2
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 1.6e-196 690.6 784 67.0
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 1.6e-196 690.6 943 59.8
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.7e-196 689.1 955 58.7
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.2e-194 684.5 779 65.7
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 3.4e-194 682.9 964 55.9
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 5.8e-194 682.2 967 57.6
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 5.8e-194 682.2 980 58.8
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.3e-193 681.0 900 58.8
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 1.1e-192 677.9 1034 56.9
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.6e-191 674.1 957 58.0
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 6.0e-191 672.2 997 55.9
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.3e-190 671.0 913 54.9
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.3e-190 671.0 782 65.9
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 3.9e-190 669.5 1058 55.9
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 3.9e-190 669.5 791 60.9
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 8.6e-190 668.3 775 64.0
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 7.3e-189 665.2 1018 55.1
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.1e-188 663.7 779 63.2
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 1.1e-187 661.4 781 61.3
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 6.8e-187 658.7 780 64.5
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 9.9e-186 654.8 904 57.0
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 4.2e-184 649.4 780 61.9
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 1.0e-182 644.8 883 58.4
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 2.3e-182 643.7 959 57.4
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 6.6e-182 642.1 786 62.8
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 1.5e-181 641.0 852 58.2
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 1.8e-179 634.0 945 54.0
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 9.9e-178 628.2 910 54.3
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 2.2e-177 627.1 988 50.8
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 1.2e-175 621.3 791 62.2
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 1.6e-175 620.9 956 54.9
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 1.6e-175 620.9 997 54.2
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 7.8e-175 618.6 973 53.5
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 3.0e-174 616.7 1042 50.2
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 8.7e-174 615.1 891 53.8
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 1.1e-173 614.8 779 62.4
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.9e-173 614.0 825 57.3
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 1.9e-173 614.0 987 53.3
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 4.3e-173 612.8 939 50.6
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 2.8e-172 610.1 780 61.9
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 2.8e-172 610.1 1045 46.8
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 3.1e-171 606.7 915 51.8
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 9.0e-171 605.1 972 53.7
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 4.6e-167 592.8 976 55.4
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 2.3e-166 590.5 920 56.0
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.1e-165 588.2 971 50.4
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 2.8e-164 583.6 959 53.4
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 3.7e-164 583.2 912 52.0
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 2.4e-163 580.5 769 60.7
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 3.1e-163 580.1 802 54.0
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 3.1e-163 580.1 911 52.4
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 2.2e-161 573.9 956 51.4
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 2.2e-161 573.9 991 53.8
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 4.9e-161 572.8 972 50.7
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 3.5e-159 566.6 955 53.0
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 3.0e-158 563.5 965 51.8
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 3.9e-158 563.1 969 52.4
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 1.1e-157 561.6 920 51.5
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 4.3e-157 559.7 966 52.2
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 1.6e-156 557.8 960 51.7
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 1.6e-156 557.8 960 51.7
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 8.2e-156 555.4 966 51.8
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.8e-155 554.3 975 51.4
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 9.0e-155 552.0 959 52.6
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.2e-154 551.6 949 51.6
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 6.5e-153 545.8 977 45.3
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 8.4e-153 545.4 991 50.1
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.4e-152 544.7 872 53.1
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 4.2e-152 543.1 794 54.4
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 4.2e-152 543.1 743 53.4
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 3.0e-150 537.0 989 50.8
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 2.5e-149 533.9 768 53.8
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.3e-148 531.6 991 49.4
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.1e-147 528.5 946 51.4
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 1.2e-146 525.0 982 52.4
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 6.1e-143 512.7 971 47.5
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 2.5e-141 507.3 780 54.9
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 9.7e-141 505.4 800 51.5
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.3e-132 478.4 930 47.2
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 3.7e-132 476.9 889 43.5
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 2.2e-129 467.6 988 48.6
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 3.2e-128 463.8 787 51.7
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 5.5e-128 463.0 864 53.0
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 8.8e-118 429.1 791 49.3
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 1.3e-113 415.2 985 45.6
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.2e-108 397.9 899 46.8
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 1.3e-105 388.7 846 48.0
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.9e-104 384.8 742 49.1
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 6.1e-103 379.8 830 44.0
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 7.8e-98 362.8 587 57.6
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 5.8e-93 346.7 838 43.9
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.7e-92 345.1 292 65.1
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 3.2e-91 340.9 796 45.5
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 5.2e-86 323.6 329 59.3
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 3.1e-78 297.7 309 57.9
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.7e-74 284.6 265 61.1
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 1.1e-64 252.7 437 43.9
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 9.9e-61 239.6 247 59.5
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.1e-59 236.1 828 39.7
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 7.9e-58 229.9 469 40.1
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.0e-57 229.6 495 37.6
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 8.4e-52 209.9 257 51.8
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 6.2e-47 193.7 160 66.2
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-42 179.5 310 47.1
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 3.0e-41 174.9 131 68.7
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 5.5e-27 127.5 71 88.7
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 6.7e-25 120.6 100 57.0
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 5.7e-24 117.5 73 80.8
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 1.2e-18 99.8 185 40.0
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 6.7e-17 94.0 135 43.0
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 8.8e-17 93.6 134 43.3
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 5.3e-14 84.3 84 45.2
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 7.0e-14 84.0 72 59.7
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 9.1e-14 83.6 114 48.2
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 2.6e-13 82.0 103 42.7
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 2.9e-12 78.6 143 36.4
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.2e-10 73.2 83 56.6
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 2.3e-09 68.9 114 46.5
PSO339G4348 Papaver somniferum HOM05D031134 ORTHO05D302392 6.3e-07 60.8 214 31.3
PSO339G1828 Papaver somniferum HOM05D031134 ORTHO05D301998 8.2e-07 60.5 214 30.8
PSO339G5906 Papaver somniferum HOM05D031134 ORTHO05D302295 8.2e-07 60.5 214 30.8
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 2.4e-06 58.9 114 42.1
Solyc09g065080.2 Solanum lycopersicum HOM05D004266 ORTHO05D005151 2.4e-06 58.9 80 33.8
PGSC0003DMG400010340 Solanum tuberosum HOM05D004266 ORTHO05D005151 4.1e-06 58.2 86 31.4
CDE07G0240 Ceratophyllum demersum HOM05D004266 ORTHO05D005151 5.3e-06 57.8 80 35.0
Sed0023525 Sechium edule HOM05D004266 ORTHO05D005151 5.3e-06 57.8 86 33.7
TWI34G1000 Tripterygium wilfordii HOM05D004266 ORTHO05D005151 9.1e-06 57.0 86 32.6


User provided reference genes

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