Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 2.0e-175 619.0 309 100.0
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 2.3e-131 472.6 306 78.1
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.3e-107 393.7 306 63.1
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 7.4e-90 334.7 296 56.4
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 8.2e-89 331.3 299 53.5
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 1.4e-88 330.5 300 53.3
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.4e-88 329.7 289 55.4
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 2.6e-87 326.2 305 53.1
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 5.9e-87 325.1 294 53.7
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 2.9e-86 322.8 305 52.1
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.4e-85 320.5 297 54.9
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 2.5e-85 319.7 305 52.1
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 7.2e-85 318.2 293 51.2
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 2.1e-84 316.6 302 52.3
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 3.6e-84 315.8 294 52.4
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 1.8e-83 313.5 310 52.6
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 2.3e-83 313.2 295 53.6
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.3e-83 313.2 310 52.6
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.0e-83 312.8 310 52.3
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.0e-83 312.8 304 52.0
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.1e-83 312.0 310 52.3
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.8e-83 311.2 310 51.9
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.0e-82 310.1 304 52.0
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 2.5e-82 309.7 294 51.0
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 4.3e-82 308.9 301 49.8
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 4.3e-82 308.9 297 52.5
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 5.7e-82 308.5 294 52.0
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 5.7e-82 308.5 294 51.0
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 5.7e-82 308.5 307 52.1
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 5.7e-82 308.5 303 48.8
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.7e-81 307.0 295 52.9
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 1.7e-81 307.0 297 52.9
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 1.7e-81 307.0 307 52.8
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.7e-81 307.0 294 51.4
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 2.2e-81 306.6 299 49.8
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 2.2e-81 306.6 294 50.7
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 2.8e-81 306.2 293 49.5
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 2.8e-81 306.2 307 48.2
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 3.7e-81 305.8 309 51.5
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 3.7e-81 305.8 296 50.7
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 4.8e-81 305.4 310 51.9
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 4.8e-81 305.4 307 50.5
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 6.3e-81 305.1 295 52.9
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 6.3e-81 305.1 307 50.5
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 8.2e-81 304.7 309 47.9
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.1e-80 304.3 294 49.3
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.4e-80 303.9 305 50.5
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.8e-80 303.5 294 49.3
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 2.4e-80 303.1 309 50.5
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 3.1e-80 302.8 295 51.2
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 5.3e-80 302.0 305 49.8
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 6.9e-80 301.6 295 50.2
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.2e-79 300.8 307 52.1
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 2.0e-79 300.1 300 48.0
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.0e-79 300.1 302 48.7
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.0e-79 300.1 294 48.3
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 5.9e-79 298.5 295 51.9
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 1.7e-78 297.0 297 50.2
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.7e-78 297.0 302 50.0
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 2.2e-78 296.6 292 47.9
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 4.2e-77 292.4 291 47.8
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 7.2e-77 291.6 305 47.2
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 7.2e-77 291.6 301 49.5
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 9.4e-77 291.2 302 49.7
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.2e-76 290.8 300 48.3
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 4.7e-76 288.9 301 48.8
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 6.1e-76 288.5 301 49.8
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 1.0e-75 287.7 293 50.9
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 1.0e-75 287.7 296 49.7
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.8e-75 287.0 293 50.2
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 3.9e-75 285.8 308 46.4
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 3.9e-75 285.8 308 46.4
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 3.9e-75 285.8 308 46.4
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 8.8e-75 284.6 305 48.5
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.5e-74 283.9 301 47.2
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 4.4e-74 282.3 300 47.3
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 5.7e-74 282.0 294 49.0
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 7.4e-74 281.6 310 47.4
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 7.4e-74 281.6 301 47.8
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 2.2e-73 280.0 302 45.4
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 4.8e-73 278.9 300 46.7
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 2.4e-72 276.6 293 48.1
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 3.1e-72 276.2 306 46.4
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 7.7e-71 271.6 282 49.3
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 1.2e-68 264.2 300 45.7
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 2.7e-68 263.1 301 43.2
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 5.7e-66 255.4 298 45.0
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.5e-66 255.0 302 44.7
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.7e-65 252.7 304 43.8
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 3.7e-65 252.7 205 61.0
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 5.3e-64 248.8 299 45.8
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 9.1e-64 248.1 304 44.1
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.2e-63 247.7 214 57.0
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.0e-63 246.9 279 49.8
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 2.0e-63 246.9 294 43.5
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 2.7e-63 246.5 233 52.4
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 5.9e-63 245.4 302 44.0
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 1.7e-62 243.8 303 40.6
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 6.5e-62 241.9 307 40.7
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 8.5e-62 241.5 274 45.3
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.9e-61 240.4 302 40.4
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 2.6e-58 229.9 212 55.2
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.3e-57 227.6 291 40.5
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 4.5e-55 219.2 313 36.7
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.5e-53 214.2 300 40.3
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 8.0e-52 208.4 316 38.6
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 4.0e-51 206.1 303 38.0
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 6.8e-51 205.3 224 45.1
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.3e-49 201.1 294 39.1
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 5.2e-43 179.1 312 34.3
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 3.2e-40 169.9 202 40.1
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 5.0e-38 162.5 200 41.5
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 1.6e-36 157.5 173 46.2
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.1e-36 157.1 297 33.3
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 2.3e-35 153.7 163 51.5
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 7.5e-34 148.7 306 31.4
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 5.4e-32 142.5 303 35.6
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 6.0e-31 139.0 306 28.1
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.9e-29 134.0 248 33.5
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.2e-28 131.3 97 66.0
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.6e-20 104.4 108 44.4
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 4.7e-20 102.8 87 58.6
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 2.3e-19 100.5 99 49.5
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 4.3e-13 79.7 69 59.4
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 1.4e-11 74.7 81 49.4
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.9e-11 72.4 89 44.9
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 2.9e-09 67.0 203 22.7
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 1.2e-07 61.6 155 31.0
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 2.7e-07 60.5 82 40.2
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.5e-07 60.1 61 45.9
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 4.6e-07 59.7 92 32.6
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.7e-06 57.8 49 49.0
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 3.0e-06 57.0 67 41.8
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 6.6e-06 55.8 56 41.1


User provided reference genes

Program Settings