Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 0.0e+00 1600.5 957 100.0
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 0.0e+00 1144.4 976 74.0
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 0.0e+00 1137.9 974 74.0
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 0.0e+00 1122.1 981 72.8
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 0.0e+00 1108.2 979 71.6
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 0.0e+00 1106.7 978 70.6
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 0.0e+00 1095.5 977 69.4
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 0.0e+00 1086.6 981 72.4
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 0.0e+00 1085.9 998 70.3
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 0.0e+00 1075.8 995 70.5
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 6.5e-312 1074.3 1025 67.5
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 3.3e-311 1071.6 1000 69.8
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 3.2e-309 1065.1 989 69.4
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 2.3e-307 1058.9 982 68.9
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 3.9e-307 1058.1 1050 64.8
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 3.3e-306 1055.0 973 70.6
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 5.3e-304 1047.7 1154 63.1
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 5.3e-304 1047.7 992 68.2
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 9.0e-304 1047.0 1008 66.1
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 2.6e-303 1045.4 995 69.0
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 7.2e-301 1037.3 979 69.1
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 7.2e-301 1037.3 975 68.1
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 1.6e-300 1036.2 995 66.8
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 6.1e-300 1034.2 1001 66.9
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 8.8e-299 1030.4 1017 66.6
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 3.3e-298 1028.5 1003 68.1
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 7.4e-298 1027.3 981 68.9
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 7.4e-298 1027.3 976 69.1
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.3e-297 1026.5 969 68.8
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 2.2e-297 1025.8 1060 64.2
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 2.8e-297 1025.4 999 67.0
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 1.1e-296 1023.5 998 68.1
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 1.8e-296 1022.7 987 66.0
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 3.1e-296 1021.9 1008 66.0
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 3.1e-296 1021.9 962 66.8
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 6.9e-296 1020.8 992 65.3
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 5.9e-295 1017.7 970 68.8
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.0e-294 1016.9 978 67.9
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 3.8e-294 1015.0 1012 63.5
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 1.1e-293 1013.4 997 67.5
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 7.2e-293 1010.7 1014 67.2
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 6.1e-292 1007.7 1041 63.2
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.8e-291 1006.1 1047 62.6
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.0e-290 1002.7 978 68.0
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 2.6e-290 1002.3 989 64.9
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 1.4e-288 996.5 1046 65.7
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.8e-288 996.1 966 65.9
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 3.5e-287 991.9 1053 62.1
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 1.3e-286 989.9 966 67.7
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 1.7e-286 989.6 988 64.2
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 8.5e-286 987.3 1027 66.2
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.2e-284 983.4 1035 63.4
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 2.1e-284 982.6 1005 66.0
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 2.0e-282 976.1 998 64.3
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.3e-281 973.4 1022 63.1
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 2.4e-280 969.1 1027 63.6
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 5.3e-280 968.0 963 65.2
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 1.6e-279 966.5 989 63.0
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 1.6e-279 966.5 981 62.6
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.6e-279 966.5 1024 61.6
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 1.3e-278 963.4 991 65.3
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 3.8e-278 961.8 718 79.5
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 3.2e-277 958.7 992 62.9
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 1.2e-276 956.8 983 62.0
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 5.2e-275 951.4 977 63.5
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 9.8e-274 947.2 992 61.8
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 8.3e-273 944.1 1028 60.2
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.4e-272 943.3 974 62.3
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 3.1e-272 942.2 983 62.1
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 7.0e-272 941.0 1075 58.1
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 3.5e-271 938.7 970 63.5
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 1.7e-270 936.4 983 61.9
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 2.2e-270 936.0 1025 60.2
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 1.9e-269 932.9 970 61.4
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 2.5e-269 932.6 999 64.2
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 4.2e-269 931.8 1001 62.2
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 3.6e-268 928.7 973 61.6
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 1.4e-267 926.8 1005 62.7
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 2.3e-267 926.0 985 60.6
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 1.2e-266 923.7 990 62.8
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 2.6e-266 922.5 1024 59.4
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.4e-264 916.8 1006 62.0
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 1.8e-264 916.4 1021 59.8
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 7.0e-264 914.4 1005 62.1
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 3.5e-263 912.1 1020 61.7
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 1.0e-262 910.6 970 60.9
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 1.0e-262 910.6 1026 61.4
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 1.0e-262 910.6 1022 61.2
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 7.2e-261 904.4 1142 54.6
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 1.2e-258 897.1 1022 58.9
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 3.7e-257 892.1 1002 62.1
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 1.1e-256 890.6 1028 60.1
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 2.7e-255 885.9 1014 58.5
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 1.7e-254 883.2 1031 57.8
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 2.3e-254 882.9 1002 58.8
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.1e-253 880.6 983 60.4
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 3.3e-253 879.0 982 61.4
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 9.5e-253 877.5 1158 53.3
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 1.0e-251 874.0 970 60.0
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 1.5e-250 870.2 974 60.6
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 1.9e-248 863.2 973 59.3
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 3.2e-248 862.4 989 58.8
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 5.4e-248 861.7 969 61.5
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 5.4e-248 861.7 1000 59.3
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 5.4e-248 861.7 1001 59.3
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 1.3e-241 840.5 960 62.5
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 2.9e-241 839.3 1023 55.3
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 8.3e-241 837.8 966 59.6
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 3.2e-240 835.9 1005 55.7
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 3.5e-239 832.4 1019 55.5
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 8.1e-236 821.2 961 58.6
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 5.2e-235 818.5 992 57.1
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 2.9e-225 786.2 979 55.8
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 1.4e-224 783.9 982 55.3
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 2.7e-223 779.6 1007 57.4
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 5.3e-219 765.4 1037 51.5
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 1.9e-208 730.3 1050 51.0
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 2.0e-202 710.3 978 54.0
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 2.5e-200 703.4 1061 48.1
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 4.1e-187 659.4 483 79.5
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 5.7e-173 612.5 1000 45.7
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 1.0e-169 601.7 869 50.1
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 3.2e-168 596.7 973 46.1
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 3.7e-156 556.6 766 53.1
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 6.1e-151 539.3 552 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 3.7e-148 530.0 955 45.9
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 3.1e-126 457.2 978 40.1
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 2.7e-114 417.5 396 64.1
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 2.8e-103 380.9 1014 35.3
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 5.1e-73 280.4 506 46.2
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 1.9e-72 278.5 533 43.7
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.4e-62 245.0 318 55.3
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 1.4e-59 235.7 344 50.0
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 2.9e-52 211.5 137 88.3
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 7.2e-51 206.8 194 63.9
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 7.2e-51 206.8 177 70.1
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 4.4e-48 197.6 385 44.7
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 1.5e-40 172.6 598 30.4
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.4e-38 166.0 237 50.6
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 2.7e-37 161.8 324 37.7
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 4.2e-35 154.5 371 40.4
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 2.8e-34 151.8 114 73.7
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 4.7e-34 151.0 367 34.9
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 3.0e-33 148.3 485 30.7
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 6.8e-33 147.1 106 80.2
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 7.5e-32 143.7 120 71.7
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 2.8e-31 141.7 90 85.6
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 3.1e-30 138.3 88 81.8
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 1.5e-27 129.4 87 80.5
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 5.6e-27 127.5 427 32.1
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 8.0e-26 123.6 434 32.3
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.8e-25 122.5 100 71.0
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 8.9e-25 120.2 362 31.8
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 2.0e-24 119.0 79 83.5
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 7.5e-24 117.1 99 69.7
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 7.5e-24 117.1 104 64.4
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 4.9e-23 114.4 588 28.9
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 2.4e-22 112.1 84 72.6
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 5.4e-22 110.9 162 51.9
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 3.9e-20 104.8 63 85.7
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 3.9e-20 104.8 699 24.3
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 6.6e-20 104.0 76 77.6
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.1e-19 103.2 643 23.8
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 2.1e-18 99.0 82 70.7
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.4e-17 96.3 97 63.9
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 2.0e-16 92.4 170 44.1
Prupe.5G245900 Prunus persica HOM05D003521 ORTHO05D000476 9.8e-16 90.1 201 41.3
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 1.3e-15 89.7 74 73.0
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 2.2e-15 89.0 180 42.2
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 8.3e-15 87.0 75 69.3
Prupe.4G118900 Prunus persica HOM05D003521 ORTHO05D000476 1.4e-14 86.3 186 42.5
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 1.9e-14 85.9 60 80.0
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.4e-14 85.5 57 82.5
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 1.2e-13 83.2 65 70.8
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 1.2e-13 83.2 65 70.8
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 1.1e-11 76.6 79 59.5
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 2.5e-11 75.5 75 64.0
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 6.8e-09 67.4 154 37.7
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 1.3e-07 63.2 45 71.1
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 2.4e-06 58.9 71 54.9
GSVIVG01038696001 Vitis vinifera HOM05D000906 ORTHO05D000713 9.2e-06 57.0 35 82.9


User provided reference genes

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