Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 6.2e-126 454.1 228 100.0
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 1.9e-87 326.2 340 55.6
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 2.8e-86 322.4 305 58.7
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 5.5e-82 308.1 350 51.4
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.0e-80 303.9 325 53.5
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 2.3e-80 302.8 350 52.6
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.5e-79 300.1 351 51.9
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.5e-79 300.1 350 51.4
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 2.5e-79 299.3 325 52.9
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 4.3e-79 298.5 304 56.6
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 4.3e-79 298.5 307 56.4
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 4.3e-79 298.5 304 56.9
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 7.4e-79 297.7 333 52.3
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 2.2e-78 296.2 336 52.4
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 2.2e-78 296.2 345 52.2
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 2.2e-78 296.2 355 49.3
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 2.8e-78 295.8 348 50.0
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 4.8e-78 295.0 350 50.6
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.4e-77 293.5 350 51.7
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 3.1e-77 292.4 368 48.6
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 6.9e-77 291.2 352 49.4
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.5e-76 290.0 352 48.6
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.6e-76 289.3 326 52.1
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 3.4e-76 288.9 380 47.9
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 4.5e-76 288.5 331 51.4
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 1.0e-75 287.3 354 47.7
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.7e-75 286.6 330 51.2
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 2.2e-75 286.2 351 48.7
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.9e-75 285.8 347 50.1
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 6.5e-75 284.6 354 46.9
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 5.5e-74 281.6 331 50.2
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 5.5e-74 281.6 329 49.8
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 5.5e-74 281.6 345 47.8
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 9.4e-74 280.8 350 48.3
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 9.4e-74 280.8 347 49.6
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 9.4e-74 280.8 350 49.7
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 2.1e-73 279.6 345 47.8
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 1.0e-72 277.3 348 47.1
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.4e-72 276.9 345 49.0
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 2.3e-72 276.2 339 48.4
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 6.7e-72 274.6 331 48.9
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 8.8e-72 274.2 344 47.4
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 8.8e-72 274.2 348 47.7
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 2.0e-71 273.1 304 51.6
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 2.0e-71 273.1 331 48.9
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 2.0e-71 273.1 344 48.0
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 2.5e-71 272.7 346 46.8
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 3.3e-71 272.3 353 47.6
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 5.7e-71 271.6 341 48.7
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 9.7e-71 270.8 346 46.8
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 1.3e-70 270.4 330 48.2
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 1.7e-70 270.0 351 47.6
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.7e-70 270.0 350 47.7
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.7e-70 270.0 342 46.8
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 1.7e-70 270.0 332 49.1
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 2.8e-70 269.2 353 45.9
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 2.8e-70 269.2 355 46.8
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 4.8e-70 268.5 338 48.2
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 6.3e-70 268.1 343 46.4
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 1.1e-69 267.3 338 49.4
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 3.1e-69 265.8 331 48.9
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 6.9e-69 264.6 341 46.6
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 6.9e-69 264.6 350 47.1
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 6.9e-69 264.6 346 48.0
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 9.1e-69 264.2 353 45.9
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 9.1e-69 264.2 332 49.4
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 1.2e-68 263.8 368 44.0
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 2.0e-68 263.1 330 49.7
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.6e-68 262.7 363 45.7
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.4e-68 262.3 343 47.5
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.4e-68 262.3 340 46.5
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.3e-67 260.4 340 46.2
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 1.7e-67 260.0 340 46.2
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 5.0e-67 258.5 365 44.1
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 5.0e-67 258.5 341 46.9
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.4e-66 256.9 378 43.4
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.4e-66 256.9 345 46.7
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 5.5e-66 255.0 349 45.3
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 9.4e-66 254.2 352 44.0
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.6e-65 253.4 352 44.0
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 3.6e-65 252.3 362 44.2
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 6.1e-65 251.5 326 45.7
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.8e-61 240.0 257 53.3
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.4e-61 239.6 295 47.1
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.1e-61 238.8 255 53.7
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 9.1e-61 237.7 331 43.5
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 1.7e-59 233.4 280 50.4
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 2.9e-59 232.6 304 45.7
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 5.0e-59 231.9 309 46.9
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.5e-59 231.1 337 43.0
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 4.2e-58 228.8 265 50.6
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 1.6e-57 226.9 289 47.4
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.2e-54 216.5 293 46.4
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 1.8e-53 213.4 352 41.8
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.5e-52 209.1 246 52.0
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 5.0e-51 205.3 100 100.0
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 3.2e-50 202.6 250 48.4
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 2.7e-49 199.5 157 66.9
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 8.0e-49 198.0 192 57.8
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 1.4e-48 197.2 159 66.0
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 4.0e-48 195.7 154 66.2
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 7.5e-47 191.4 239 46.4
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 7.0e-45 184.9 403 33.7
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 9.1e-45 184.5 308 41.6
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 1.6e-44 183.7 447 32.7
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.8e-43 179.1 153 58.2
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.9e-42 176.8 165 56.4
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 3.2e-42 176.0 237 46.8
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.2e-42 175.6 154 57.1
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 1.2e-41 174.1 317 39.1
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 2.6e-39 166.4 216 48.6
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 9.8e-39 164.5 446 30.3
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 3.7e-38 162.5 155 53.5
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 5.5e-34 148.7 97 72.2
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 9.5e-34 147.9 173 47.4
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 6.1e-33 145.2 154 54.5
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 2.3e-32 143.3 280 37.1
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 1.3e-30 137.5 169 43.8
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.4e-29 133.3 229 36.7
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 2.9e-27 126.3 81 76.5
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 5.0e-27 125.6 112 58.9
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 9.5e-26 121.3 82 74.4
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 4.7e-25 119.0 85 62.4
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 1.8e-24 117.1 81 74.1
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 2.3e-24 116.7 87 69.0
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 4.0e-24 115.9 81 71.6
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.7e-22 110.5 131 49.6
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.6e-18 95.5 108 44.4
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 1.2e-17 94.4 112 48.2
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.1e-17 91.7 164 37.2
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.3e-14 84.3 87 55.2
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 3.2e-13 79.7 157 31.8
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 7.1e-13 78.6 408 23.8
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 2.7e-12 76.6 89 51.7
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 1.1e-10 71.2 42 76.2
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 3.4e-07 59.7 39 69.2
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 7.6e-07 58.5 46 58.7


User provided reference genes

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