Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 7.9e-177 623.6 307 100.0
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.7e-126 456.4 320 74.7
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 4.6e-124 448.4 323 74.0
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 6.0e-124 448.0 320 72.8
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 7.8e-124 447.6 324 73.8
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 2.3e-123 446.0 322 71.4
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 8.6e-123 444.1 324 73.5
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 3.3e-122 442.2 325 70.5
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.6e-121 439.9 320 71.9
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 4.7e-121 438.3 327 70.6
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 6.2e-121 438.0 319 72.4
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 1.1e-120 437.2 321 70.4
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.4e-120 436.8 323 71.5
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 4.0e-120 435.3 323 71.5
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 6.8e-120 434.5 322 71.4
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 6.8e-120 434.5 320 71.2
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 2.0e-119 433.0 320 70.6
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 2.0e-119 433.0 320 68.4
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 2.6e-119 432.6 317 71.6
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 3.4e-119 432.2 320 69.7
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 4.4e-119 431.8 324 70.1
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 1.3e-118 430.3 321 70.4
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.7e-118 429.9 322 68.9
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 2.9e-118 429.1 321 70.7
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 1.1e-117 427.2 322 68.9
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 2.4e-117 426.0 322 68.6
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 2.4e-117 426.0 334 67.7
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.6e-116 423.3 324 68.2
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 1.6e-116 423.3 324 69.1
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.7e-116 422.5 324 68.5
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 2.7e-116 422.5 324 68.5
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 4.6e-116 421.8 347 65.4
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 6.0e-116 421.4 323 67.2
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 2.3e-115 419.5 311 72.3
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 3.0e-115 419.1 320 68.8
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 5.1e-115 418.3 322 68.0
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 6.6e-115 417.9 365 63.0
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 8.6e-115 417.5 321 68.5
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 1.5e-114 416.8 323 68.7
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 1.5e-114 416.8 321 68.2
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 2.5e-114 416.0 320 68.8
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 3.3e-114 415.6 324 68.5
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 9.5e-114 414.1 323 67.5
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 1.2e-113 413.7 324 67.3
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 6.2e-113 411.4 324 67.6
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 1.8e-112 409.8 323 67.8
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 4.0e-112 408.7 324 67.0
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 3.4e-111 405.6 322 67.4
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 9.9e-111 404.1 321 66.7
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 2.9e-110 402.5 320 66.9
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 4.9e-110 401.7 322 64.0
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 8.4e-110 401.0 322 64.3
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.4e-109 400.2 318 66.0
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 1.4e-109 400.2 322 66.1
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.2e-108 397.1 324 64.8
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 2.1e-108 396.4 318 65.1
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 2.7e-108 396.0 325 64.3
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 2.3e-107 392.9 322 62.7
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 5.1e-107 391.7 310 65.8
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 1.1e-106 390.6 325 64.3
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 1.5e-106 390.2 324 63.9
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 1.6e-105 386.7 337 60.5
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 4.7e-105 385.2 322 64.0
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 8.1e-105 384.4 323 63.2
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.2e-103 380.6 323 62.8
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 1.2e-103 380.6 323 62.8
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 2.2e-102 376.3 324 61.4
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 6.4e-102 374.8 317 62.8
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 1.1e-101 374.0 317 63.1
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 5.4e-101 371.7 317 63.1
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 7.1e-101 371.3 317 62.5
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 7.1e-101 371.3 317 62.5
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.2e-100 370.5 322 61.5
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 1.6e-100 370.2 317 62.1
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 1.6e-100 370.2 308 64.0
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 7.8e-100 367.9 282 70.2
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 2.3e-99 366.3 313 62.3
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 6.2e-97 358.2 315 60.3
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 6.9e-96 354.8 321 60.4
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 2.0e-95 353.2 308 61.7
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 6.4e-94 348.2 323 60.4
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 8.4e-94 347.8 320 58.8
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 1.1e-93 347.4 319 60.8
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 1.4e-93 347.1 308 59.7
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.9e-93 346.7 323 60.1
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 2.4e-93 346.3 310 59.0
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 4.2e-93 345.5 328 56.4
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 3.9e-91 339.0 311 59.5
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 6.6e-91 338.2 310 59.0
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 2.1e-89 333.2 310 58.1
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 2.8e-89 332.8 321 57.0
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 2.0e-87 326.6 285 62.1
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 2.2e-86 323.2 339 53.1
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.8e-86 322.4 302 61.6
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 5.6e-82 308.5 244 65.2
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 2.0e-79 300.1 231 69.3
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 1.5e-71 273.9 314 49.4
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.6e-68 263.8 345 46.4
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 1.1e-66 257.7 267 53.9
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 6.3e-65 251.9 323 45.8
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 1.5e-58 230.7 304 43.8
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 4.5e-55 219.2 185 63.2
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 2.5e-53 213.4 453 34.0
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 2.0e-50 203.8 156 70.5
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 4.4e-50 202.6 322 39.4
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 5.7e-50 202.2 151 67.5
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 7.0e-48 195.3 322 39.1
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 1.6e-44 184.1 157 64.3
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 1.5e-34 151.0 163 55.8
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 3.4e-34 149.8 138 56.5
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 9.8e-34 148.3 104 66.3
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.3e-33 147.9 146 54.8
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 5.0e-30 136.0 144 50.7
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 1.9e-29 134.0 80 76.2
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.8e-28 130.2 147 50.3
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 8.0e-20 102.1 134 43.3
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 7.0e-16 89.0 57 70.2
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 1.2e-15 88.2 70 62.9
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 3.0e-14 83.6 133 41.4
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 1.2e-10 71.6 63 60.3
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 4.4e-10 69.7 49 65.3
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 7.5e-10 68.9 49 73.5
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 9.8e-10 68.6 56 69.6
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 2.4e-08 63.9 80 47.5


User provided reference genes

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