Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G02797 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 8.1e-94 347.1 174 100.0
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 1.3e-11 73.9 82 39.0
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 5.0e-11 72.0 111 35.1
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 5.0e-11 72.0 99 39.4
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 5.0e-11 72.0 73 38.4
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 5.0e-11 72.0 73 38.4
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 6.6e-11 71.6 75 42.7
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 8.6e-11 71.2 67 44.8
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 8.6e-11 71.2 91 38.5
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 3.3e-10 69.3 74 39.2
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 3.3e-10 69.3 73 43.8
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 4.3e-10 68.9 73 43.8
Mapoly0010s0167 Marchantia polymorpha HOM05D003719 ORTHO05D004116 4.3e-10 68.9 108 35.2
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 4.3e-10 68.9 93 37.6
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 5.6e-10 68.6 102 34.3
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 7.3e-10 68.2 91 37.4
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 1.2e-09 67.4 79 41.8
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 1.6e-09 67.0 65 47.7
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 2.1e-09 66.6 79 40.5
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 2.1e-09 66.6 82 36.6
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 2.1e-09 66.6 81 38.3
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 2.8e-09 66.2 121 31.4
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 2.8e-09 66.2 81 38.3
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 2.8e-09 66.2 81 38.3
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 2.8e-09 66.2 81 38.3
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 3.6e-09 65.9 65 46.2
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 3.6e-09 65.9 79 36.7
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 3.6e-09 65.9 54 46.3
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 4.7e-09 65.5 117 33.3
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 4.7e-09 65.5 117 33.3
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 4.7e-09 65.5 63 41.3
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 4.7e-09 65.5 81 37.0
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 4.7e-09 65.5 139 30.2
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 6.2e-09 65.1 72 40.3
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 6.2e-09 65.1 85 38.8
DCAR_025000 Daucus carota HOM05D003719 ORTHO05D004116 6.2e-09 65.1 66 42.4
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 6.2e-09 65.1 54 46.3
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 6.2e-09 65.1 77 37.7
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 6.2e-09 65.1 74 40.5
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 6.2e-09 65.1 71 35.2
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 6.2e-09 65.1 71 35.2
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 6.2e-09 65.1 77 40.3
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 6.2e-09 65.1 77 41.6
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 6.2e-09 65.1 75 41.3
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 8.0e-09 64.7 74 40.5
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 8.0e-09 64.7 54 51.9
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 8.0e-09 64.7 73 34.2
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 1.1e-08 64.3 64 42.2
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 1.1e-08 64.3 88 37.5
HanXRQChr04g0117671 Helianthus annuus HOM05D003719 ORTHO05D004116 1.1e-08 64.3 78 39.7
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.1e-08 64.3 66 39.4
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 1.4e-08 63.9 63 42.9
DCAR_015727 Daucus carota HOM05D003719 ORTHO05D004116 1.4e-08 63.9 109 33.9
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 1.4e-08 63.9 70 42.9
Oeu034882.1 Olea europaea HOM05D003719 ORTHO05D004116 1.4e-08 63.9 86 34.9
PSO170G3936 Papaver somniferum HOM05D033783 ORTHO05D004116 1.4e-08 63.9 97 35.1
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 1.4e-08 63.9 71 39.4
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 1.4e-08 63.9 54 46.3
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 1.4e-08 63.9 63 46.0
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 1.8e-08 63.5 64 42.2
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 1.8e-08 63.5 93 37.6
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 2.3e-08 63.2 88 36.4
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 2.3e-08 63.2 62 41.9
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 2.3e-08 63.2 77 39.0
PSO017G0756 Papaver somniferum HOM05D003719 ORTHO05D004116 2.3e-08 63.2 54 46.3
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 3.1e-08 62.8 77 37.7
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 3.1e-08 62.8 64 46.9
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 3.1e-08 62.8 137 28.5
PSO017G2979 Papaver somniferum HOM05D033783 ORTHO05D004116 3.1e-08 62.8 97 34.0
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 3.1e-08 62.8 119 32.8
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 3.1e-08 62.8 65 43.1
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 3.1e-08 62.8 73 38.4
Mapoly0024s0010 Marchantia polymorpha HOM05D003719 ORTHO05D004116 4.0e-08 62.4 107 31.8
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 5.2e-08 62.0 73 39.7
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 5.2e-08 62.0 73 39.7
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 5.2e-08 62.0 73 39.7
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 5.2e-08 62.0 73 39.7
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 5.2e-08 62.0 73 39.7
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 5.2e-08 62.0 102 32.4
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 5.2e-08 62.0 77 39.0
BcaB01g05152 Brassica carinata HOM05D003719 ORTHO05D004116 8.9e-08 61.2 68 41.2
BolC3t13474H Brassica oleracea HOM05D003719 ORTHO05D004116 8.9e-08 61.2 68 41.2
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 8.9e-08 61.2 73 37.0
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 8.9e-08 61.2 62 40.3
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 1.2e-07 60.8 67 43.3
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 1.2e-07 60.8 74 35.1
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 1.2e-07 60.8 74 35.1
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 1.2e-07 60.8 116 34.5
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 1.2e-07 60.8 73 39.7
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 1.5e-07 60.5 73 38.4
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 1.5e-07 60.5 73 38.4
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 1.5e-07 60.5 73 38.4
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 1.5e-07 60.5 73 38.4
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 1.5e-07 60.5 107 32.7
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 2.0e-07 60.1 54 44.4
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 2.0e-07 60.1 73 39.7
SEGI_28532 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 2.0e-07 60.1 122 32.0
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 2.0e-07 60.1 61 45.9
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 2.6e-07 59.7 81 34.6
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 2.6e-07 59.7 81 34.6
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 2.6e-07 59.7 55 43.6
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 3.4e-07 59.3 125 30.4
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 4.4e-07 58.9 94 31.9
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 4.4e-07 58.9 94 31.9
Lalb_Chr13g0290921 Lupinus albus HOM05D003719 ORTHO05D004116 4.4e-07 58.9 97 37.1
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 4.4e-07 58.9 116 30.2
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 4.4e-07 58.9 54 42.6
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 5.8e-07 58.5 105 33.3
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 5.8e-07 58.5 105 33.3
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 5.8e-07 58.5 118 31.4
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 5.8e-07 58.5 54 42.6
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 5.8e-07 58.5 54 44.4
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 5.8e-07 58.5 87 35.6
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 7.5e-07 58.2 73 37.0
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 7.5e-07 58.2 73 37.0
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 7.5e-07 58.2 72 40.3
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 7.5e-07 58.2 113 29.2
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 7.5e-07 58.2 103 31.1
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 7.5e-07 58.2 68 39.7
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 9.8e-07 57.8 73 34.2
BraA09t38097Z Brassica rapa HOM05D003719 ORTHO05D004116 9.8e-07 57.8 73 34.2
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 9.8e-07 57.8 73 35.6
Glyma.03G111600 Glycine max HOM05D003719 ORTHO05D004116 9.8e-07 57.8 66 39.4
A03p08460 Brassica napus HOM05D003719 ORTHO05D004116 1.3e-06 57.4 154 27.3
BraA03t10169Z Brassica rapa HOM05D003719 ORTHO05D004116 1.3e-06 57.4 154 27.3
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 1.3e-06 57.4 65 41.5
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 1.7e-06 57.0 76 36.8
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 1.7e-06 57.0 119 30.3
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 1.7e-06 57.0 106 32.1
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 2.2e-06 56.6 55 40.0
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 2.2e-06 56.6 55 40.0
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 2.2e-06 56.6 69 43.5
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 2.2e-06 56.6 88 31.8
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 2.9e-06 56.2 78 35.9
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 2.9e-06 56.2 118 28.0
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 3.7e-06 55.8 78 34.6
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 3.7e-06 55.8 74 37.8
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 3.7e-06 55.8 96 30.2
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 3.7e-06 55.8 116 29.3
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 6.4e-06 55.1 109 32.1
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 6.4e-06 55.1 54 40.7


User provided reference genes

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