Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 2331.6 1217 100.0
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1473.8 1226 65.5
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1401.7 1248 63.0
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1369.8 1210 62.3
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1345.5 1239 59.6
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1343.9 1033 68.1
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1327.8 1300 57.7
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1317.0 1223 59.9
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1316.2 1223 59.9
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1316.2 912 75.1
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1312.7 1238 59.0
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1302.7 1226 59.1
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1300.0 1227 59.0
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1299.3 1239 58.5
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1298.9 1052 64.3
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1288.5 1278 56.0
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1286.2 1075 63.6
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1279.2 1250 57.6
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1272.7 1267 57.3
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1271.1 1211 59.1
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1270.8 1275 55.9
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1270.0 1035 64.0
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1267.7 952 68.6
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1265.4 1002 65.2
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1261.1 1035 63.8
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1250.0 1243 56.9
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1250.0 1033 64.7
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1237.6 1260 56.6
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1235.3 1042 63.8
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1234.6 1219 57.7
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1234.6 1038 62.6
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1228.4 1065 61.7
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1227.2 1058 62.5
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1227.2 1210 56.6
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1226.8 1234 56.2
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1226.5 1047 62.8
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1226.1 1339 53.5
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1225.7 1046 63.0
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1225.7 1008 63.8
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1225.3 1047 62.8
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1224.2 1208 56.5
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1221.5 1044 62.5
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1221.1 1057 62.0
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1220.7 1008 64.1
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1218.0 1239 55.7
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1218.0 1292 54.3
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1217.6 1033 62.4
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1216.4 1056 61.9
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1213.0 1050 61.4
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1211.1 871 71.0
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1209.5 1047 61.5
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1207.6 1050 61.9
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1207.2 913 67.1
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1207.2 1205 56.5
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1199.5 1078 60.2
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1197.2 1085 60.2
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1194.5 933 66.1
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1183.7 1094 59.0
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1179.1 1272 53.5
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1176.8 910 67.4
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1174.8 1325 53.4
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1166.4 1221 56.1
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 0.0e+00 1159.8 1079 59.1
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1158.7 1261 52.9
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1149.0 1110 58.2
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1144.0 1099 58.5
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1142.1 1086 58.5
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 0.0e+00 1142.1 1257 53.8
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1141.7 992 61.6
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1141.3 1045 60.6
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1137.5 1091 58.1
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1136.7 1113 57.1
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1127.9 873 68.3
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 0.0e+00 1108.2 1029 58.8
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 0.0e+00 1094.7 828 68.7
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 8.5e-307 1057.4 803 67.0
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 8.5e-307 1057.4 813 67.2
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 4.7e-305 1051.6 1049 56.3
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 2.3e-304 1049.3 1014 58.6
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 2.0e-303 1046.2 834 66.9
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 6.1e-297 1024.6 909 62.2
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 2.0e-292 1009.6 937 57.2
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 1.4e-288 996.9 1221 50.7
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 1.0e-275 954.1 755 66.6
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.8e-272 943.3 1094 49.3
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.0e-272 942.2 1043 50.5
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.9e-270 936.0 956 52.8
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 4.6e-268 928.7 1008 52.6
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.1e-256 891.0 1182 46.6
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 2.0e-255 886.7 720 66.7
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 4.4e-255 885.6 681 66.1
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 3.8e-254 882.5 679 66.0
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 7.6e-247 858.2 864 53.6
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 8.1e-241 838.2 906 51.5
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 2.4e-240 836.6 594 72.2
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-236 823.9 629 68.5
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 4.6e-228 795.8 614 66.8
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 8.8e-203 711.8 628 60.8
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 9.1e-200 701.8 497 73.6
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 3.2e-197 693.3 1087 43.9
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 2.0e-186 657.5 474 67.9
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 4.4e-178 629.8 705 52.8
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 7.0e-160 569.3 452 64.8
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.7e-158 564.7 751 43.7
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 9.8e-154 548.9 736 44.7
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 4.9e-137 493.4 390 66.4
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 6.9e-131 473.0 421 60.3
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 8.4e-121 439.5 348 64.9
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 1.1e-107 396.0 388 57.7
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.5e-103 380.9 382 57.3
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 2.4e-91 341.7 374 46.8
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.4e-67 261.9 306 52.6
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.3e-67 260.8 534 35.4
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 9.4e-64 250.0 351 44.2
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 6.1e-63 247.3 228 57.5
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 4.0e-62 244.6 702 29.8
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 1.4e-59 236.1 176 67.6
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 2.0e-58 232.3 250 52.4
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.7e-58 231.9 266 52.3
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 8.6e-57 226.9 170 65.9
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 2.5e-56 225.3 212 57.1
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.6e-55 222.6 165 68.5
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.0e-53 215.7 261 46.7
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 2.8e-52 211.8 165 67.3
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 4.1e-51 208.0 745 28.6
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 5.0e-49 201.1 728 26.5
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.8e-46 192.6 737 26.2
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.3e-46 192.2 712 27.9
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.9e-44 185.3 147 61.9
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 3.7e-44 184.9 461 34.7
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.4e-43 182.2 889 24.9
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 1.6e-42 179.5 148 60.8
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 4.6e-42 177.9 170 58.2
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.2e-39 169.9 112 71.4
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 3.1e-38 165.2 156 54.5
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 8.9e-38 163.7 670 26.4
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 2.6e-37 162.2 122 61.5
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 3.4e-37 161.8 248 41.5
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.9e-35 156.0 513 29.0
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.1e-35 154.8 266 38.0
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 1.2e-34 153.3 815 26.0
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.5e-32 145.6 826 24.2
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.3e-32 145.2 157 49.0
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 1.5e-29 136.3 487 25.7
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.9e-27 129.4 749 24.6
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 2.1e-23 115.9 149 45.6
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 3.1e-22 112.1 114 56.1
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 5.2e-22 111.3 73 71.2
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 8.9e-22 110.5 82 64.6
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 2.0e-21 109.4 105 51.4
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 9.3e-19 100.5 747 24.0
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 4.6e-18 98.2 69 73.9
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 6.0e-18 97.8 295 28.5
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 4.3e-16 91.7 262 27.9
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.5e-13 83.2 118 41.5
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 2.9e-12 79.0 441 23.4
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 4.9e-12 78.2 150 34.7
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.9e-09 68.6 103 41.7
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.9e-08 66.2 183 31.7
SMO115G0155 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 9.0e-06 57.4 69 40.6


User provided reference genes

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