Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aqoxy1G02836 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 2.4e-116 422.2 214 100.0
Aqoxy7G00613 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 2.4e-116 422.2 214 100.0
Aqoxy6G00957 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 5.3e-95 351.3 217 82.0
Aqoxy7G00614 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 2.5e-89 332.4 203 82.8
Aqoxy5G03430 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 1.9e-76 289.7 194 78.9
Aqoxy1G02838 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 4.2e-76 288.5 166 88.0
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 2.9e-40 169.5 200 52.0
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 3.7e-40 169.1 200 51.5
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.7e-40 169.1 200 51.5
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.7e-40 169.1 200 51.5
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.7e-40 169.1 200 51.5
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 3.7e-40 169.1 200 51.5
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 4.9e-40 168.7 200 51.0
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 4.9e-40 168.7 200 51.0
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 6.4e-40 168.3 200 51.5
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 6.4e-40 168.3 200 51.5
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 1.1e-39 167.5 200 51.0
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 1.1e-39 167.5 200 51.0
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.4e-39 167.2 200 51.5
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 1.4e-39 167.2 200 51.5
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.4e-39 167.2 200 51.0
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 1.4e-39 167.2 200 51.0
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 1.8e-39 166.8 200 51.0
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 1.8e-39 166.8 200 51.0
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 1.8e-39 166.8 200 51.0
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.8e-39 166.8 200 50.5
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 1.8e-39 166.8 200 51.0
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 1.8e-39 166.8 200 51.0
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 1.8e-39 166.8 200 51.0
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 1.8e-39 166.8 200 51.0
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 2.4e-39 166.4 200 51.0
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 2.4e-39 166.4 200 50.0
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 2.4e-39 166.4 200 51.0
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 51.0
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 51.5
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 50.5
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 50.5
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 51.0
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 50.0
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 50.0
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 50.0
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 50.5
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 50.5
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 50.5
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 51.0
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 51.0
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 51.0
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 50.5
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 51.0
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 51.0
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 51.0
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 3.2e-39 166.0 200 50.5
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
Atru.chr7.2125 Acer truncatum HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 51.0
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 51.5
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 51.0
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 51.0
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 51.5
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 51.5
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.0
HPP92_019915 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.5
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 4.1e-39 165.6 200 50.0
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 50.5
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 50.5
BcaB04g19963 Brassica carinata HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 51.0
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 51.0
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 51.0
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 51.0
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 51.0
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 50.5
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 50.5
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 51.0
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 51.0
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 51.0
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 50.5
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 50.5
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 50.5
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 51.0
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 5.4e-39 165.2 200 50.5
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 7.0e-39 164.9 200 50.0
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 7.0e-39 164.9 200 50.5
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 9.2e-39 164.5 200 50.0
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 9.2e-39 164.5 200 50.5
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 9.2e-39 164.5 200 50.5
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 9.2e-39 164.5 200 51.0
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 9.2e-39 164.5 200 51.0
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 1.2e-38 164.1 200 50.0
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 1.2e-38 164.1 200 50.5
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 1.2e-38 164.1 200 50.0
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 1.6e-38 163.7 200 50.5
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 1.6e-38 163.7 200 50.0
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 1.6e-38 163.7 200 50.5
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 1.6e-38 163.7 200 50.5
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 1.6e-38 163.7 200 50.0
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 2.0e-38 163.3 200 50.0
HPP92_010359 Vanilla planifolia HOM05D003084 ORTHO05D003580 2.0e-38 163.3 200 50.5
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 2.7e-38 162.9 198 49.0
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 2.7e-38 162.9 200 49.5
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 2.7e-38 162.9 200 49.5
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 2.7e-38 162.9 200 50.5
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 3.5e-38 162.5 200 50.0
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 3.5e-38 162.5 200 50.0
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 3.5e-38 162.5 200 49.5
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 3.5e-38 162.5 200 50.0
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 4.6e-38 162.2 200 50.0
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 4.6e-38 162.2 200 50.0
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 7.8e-38 161.4 200 50.0
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 7.8e-38 161.4 200 50.0
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 1.0e-37 161.0 200 50.0
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 1.3e-37 160.6 200 49.5
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 1.7e-37 160.2 200 49.5
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 1.7e-37 160.2 200 48.5
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 1.7e-37 160.2 200 48.5
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.3e-37 159.8 216 46.8
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 3.9e-37 159.1 200 48.5
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 5.0e-37 158.7 200 48.5
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 1.5e-36 157.1 200 49.0
HPP92_010380 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.5e-36 157.1 200 49.5
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 1.9e-36 156.8 195 46.7
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 3.3e-36 156.0 243 43.2
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 5.6e-36 155.2 200 49.0
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 2.3e-34 149.8 216 44.0
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 4.0e-34 149.1 155 53.5
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 4.0e-34 149.1 204 46.6
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.0e-34 149.1 204 46.6
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 6.8e-34 148.3 164 53.7
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 6.8e-34 148.3 204 46.6
Aqoxy4G01165 Aquilegia oxysepala HOM05D003084 ORTHO05D018407 2.6e-33 146.4 92 83.7
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 2.6e-33 146.4 184 46.7
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 4.4e-33 145.6 151 53.0
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 4.4e-33 145.6 200 47.0
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 7.5e-33 144.8 216 42.6
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 1.7e-32 143.7 200 46.5
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 2.2e-32 143.3 200 45.5
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 6.4e-32 141.7 215 43.7
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 5.4e-31 138.7 200 45.5
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 1.6e-30 137.1 199 45.2
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 6.0e-30 135.2 200 44.5
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.0e-29 134.4 216 40.7
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 2.3e-29 133.3 200 44.5
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 2.3e-29 133.3 200 40.5
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 3.0e-29 132.9 175 47.4
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 4.3e-28 129.0 218 40.8
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.2e-27 127.5 200 43.0
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 2.8e-27 126.3 216 39.8
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 3.1e-26 122.9 204 41.7
DCAR_028101 Daucus carota HOM05D003084 ORTHO05D003580 8.9e-26 121.3 190 42.1
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.5e-25 120.6 144 52.1
DCAR_024485 Daucus carota HOM05D003084 ORTHO05D003580 1.2e-22 110.9 191 38.7
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 3.5e-22 109.4 169 36.7
Rhsim09G0053300 Rhododendron simsii HOM05D003084 ORTHO05D003580 6.0e-22 108.6 91 61.5
DCAR_028103 Daucus carota HOM05D003084 ORTHO05D018407 6.6e-21 105.1 138 43.5
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 1.2e-17 94.4 96 53.1
PGSC0003DMG400009195 Solanum tuberosum HOM05D003084 ORTHO05D003580 3.2e-15 86.3 111 45.9
Solyc07g041790.1 Solanum lycopersicum HOM05D003084 ORTHO05D003580 2.8e-11 73.2 69 53.6
Dinv04118 Davidia involucrata HOM05D003084 ORTHO05D003580 1.1e-10 71.2 152 37.5
Sopen07g021280 Solanum pennellii HOM05D003084 ORTHO05D003580 2.0e-09 67.0 57 54.4
MD12G1233800 Malus domestica HOM05D003084 ORTHO05D003580 2.2e-08 63.5 198 31.3
Haze_26699 Corylus avellana HOM05D003084 ORTHO05D003580 1.6e-06 57.4 119 36.1
Nitab4.5_0002746g0040 Nicotiana tabacum HOM05D003084 ORTHO05D003580 7.8e-06 55.1 81 42.0


User provided reference genes

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